Cynara cardunculus var. scolymus (artichoke): 112522056
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Entry
112522056 CDS
T05604
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112522056
09123 Folding, sorting and degradation
03018 RNA degradation
112522056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112522056
03041 Spliceosome [BR:
ccav03041
]
112522056
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112522056
mRNA cycle factors
Stress granule specific factors
112522056
Spliceosome [BR:
ccav03041
]
Complex C
Other components
Complex C specific factors
112522056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_5
RRM_8
DUF7674
Motif
Other DBs
NCBI-GeneID:
112522056
NCBI-ProteinID:
XP_024986890
LinkDB
All DBs
Position
LG 11:complement(6337683..6345831)
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AA seq
623 aa
AA seq
DB search
MASSSPSLIVPASLYVGDLHPEINDIQLTNAFSDYKSLSSVRVCRDSSTGRSLCYGYVNF
LSPQEATRAIEAKNNTMLYGKMIRVTRANRDPDVRNGIGNVFVKNLNESIDNVQLQELFQ
SFGNILSCKVSTFEDGKSKGYGYVQFESEESSNAAIENLNGTSFGGKQIYVGKFMKKSDR
LLPSPDAKYTNLYIKNLDLDITEDVLKQKFSVFGNIVSLVIVQDDNGVSKGFGFVNFENP
DDAKKATEAMNGLNLGAKVLYVGRAQKKSEREQILRRQFEEWRKEQISKYQGSNVYVKNI
NDNVTENELRECFSQCGTITSAKLMINDKGMSKGFGFVCFSTPEEANKAVNTFHGYMFHG
KPLYVAIAQRKEERQAQLQIQYAQRLAGIAGPSTIIPGGYPPLYYTTRPGIISQVPPRPG
LMYQPMGIRPGWMPNTYAPPTRPAETSSLSSIFDGPRLQRQNRGRMNGHMHSQDGPQTVP
YVSHLQQPVQTSTDSSNQQRVGQVRYAPNGYVQGSNKGSSSAGPEMLSTMLAAASPEIQK
QILGERLYPLVNQFKPDLAAKITGMLLEMDNLEVLLLLESPEALASKVEEAVQVLELSNK
TKVSSQQQESLHPNLLSAQVAVN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcgtcaccgtcgttgattgtccctgcgtcgctgtatgtaggggatttgcat
ccggaaatcaacgatatacaattgaccaatgcattctcagactacaagagcctctcctcc
gttcgggtttgtcgtgactcttccaccggccgatctctctgttatggctatgtcaacttc
ctctctccacaagaagctacacgagcgatagaggctaaaaacaacaccatgctgtacggg
aaaatgataagggtgacaagggcaaatcgggaccctgatgtaagaaatggaattgggaat
gtgtttgtcaagaatttaaatgagtcaattgataatgttcaacttcaagaattgtttcaa
agctttgggaatattttgtcttgcaaagtttccacatttgaggatggcaagagcaaaggg
tatggttatgttcagtttgaatcagaggaatcttcaaatgctgctattgagaatcttaat
ggcactagttttggaggcaagcaaatatatgtagggaagttcatgaagaagagtgatcga
ctattacccagtcctgatgccaagtacacaaatctttacatcaagaatctagacttagat
ataacagaagacgttcttaagcaaaagttctctgtgtttggaaacattgttagcttggtt
atagtgcaagacgataacggggtttcaaaaggctttgggtttgtgaattttgagaaccca
gatgatgctaagaaggcaacagaagctatgaacggattaaaccttggtgcaaaggttcta
tatgttggtagagcacaaaaaaaatcagagcgagaacaaattttgcgtcgtcagtttgag
gagtggaggaaagaacaaatatcaaaataccagggttcaaatgtttatgttaagaatatc
aacgacaacgtcactgagaatgaactgcgagaatgcttcagtcagtgtggcactatcacc
tctgcaaaattgatgattaatgacaaagggatgagtaaagggtttggatttgtctgcttc
tctacaccagaggaagcaaacaaggctgtgaacacttttcatggatacatgtttcacgga
aagcctttatatgttgccattgctcaaagaaaagaagagagacaggcacaattacagatc
cagtatgcacaacgtttggccggaattgcaggaccatctactatcatccctggtggatat
cctcctctttactatacaactcgtcccggtattatttcacaagtacctccacgaccggga
ttgatgtatcaacctatgggcataaggccgggatggatgcctaatacctatgctcctcca
acaagacccgctgaaacatcttctctttcttctatttttgatggtccaagactgcaaaga
caaaataggggaaggatgaatggacatatgcattcacaggatggtcctcagactgttcca
tatgtttcccacctgcaacagcctgttcagacatcaactgattctagcaaccaacagcgg
gtaggacaggttcggtatgcgccaaatgggtatgtccagggaagtaacaaaggatcaagt
tctgctggacctgagatgttgagtactatgcttgctgctgcttcacccgagatccagaag
caaattctaggagaacgtctctacccgcttgtcaaccaattcaagcctgatcttgctgct
aagataacgggaatgctgttggagatggataacttggaggtgctattgttgttggaatca
ccggaagctttagcatcgaaagttgaagaagctgtgcaggtgctggagttatctaataag
acgaaagtatcaagccagcagcaagaaagccttcacccgaacttgttatctgcccaagtc
gcagtcaactaa
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