Cynara cardunculus var. scolymus (artichoke): 112522152
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Entry
112522152 CDS
T05604
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112522152
Transcription machinery [BR:
ccav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
112522152
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GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
HTH_31
Motif
Other DBs
NCBI-GeneID:
112522152
NCBI-ProteinID:
XP_024986999
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Position
LG 11:13536083..13542366
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AA seq
528 aa
AA seq
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MGLGFRLNLKWGLSIQPPLSSNSSFFPSSTYASFKGKDINYDMARVSLPMESETSYNDPV
NGNACSSTSRILDIDYSETGNIKRSGGSSLRHDKLTFLTSLQANNISQYRLLLENLVVLE
DTFADSDVVTLERDILVQLEKLGALRLLRTSFSEIQKHPFSTNSINEGIVKPIVPSTRKI
QRKSQRERTSKKGNGVPMGFRSEAIKHKNSRRVNFSSRRSSNSKAGRLKITRNEAELSQG
VKMVANLERIRMMLEEDTGPMVSFSSWAAAAGIDKKVLLENLQFGWCCRDELLKSTRSLV
IYIAKNYNGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTYVQYWIKKSLLMLLSRHS
REIRIPLTLSKAISQIQKARKALASGDGRWPDDCEVAKFTGLSLAKIGSASNCLRVVGSI
NQNFSNGIDAKFWECMPDPAAMTPEEILMKQDMMNEIYNRMRDLDARERIVLVLRFGLKG
YQRKTLEEIGRSFGVSKEWIRRIERRALTKLKVDDEETLQSLRHYLYI
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgggtttcaggcttaacttgaaatggggtctctccattcaacctcctctttca
tccaattcctcattcttcccctcctcaacgtatgcatcctttaaaggcaaagacattaat
tatgacatggcaagggtatctctcccaatggaaagtgagacttcttacaatgatcctgtt
aacggaaatgcatgttcatctacgtcccggatcttggacattgattactcagaaactggc
aatatcaagaggagtggtggcagttcattacgacatgataaattaacattccttacaagc
ttacaagcaaacaatatatcgcaatataggttactcttggaaaatcttgttgtgttggag
gatacatttgctgattcagatgtggtaactctagaacgagacatactggttcaattagaa
aagcttggagctttgaggcttctccgtacttctttttctgaaatacaaaaacacccattt
tcaactaactctataaatgaaggaattgtcaagcccattgtgccatctacaagaaagata
caaagaaagtcccaaagagaacgaacatcaaaaaagggcaatggtgttccgatgggtttt
cgttcagaagccatcaaacataagaattcaagacgggtaaacttttcgtcaagaagatca
tcaaattctaaagctggaagactcaaaatcactaggaatgaggcagaactatcacaaggg
gttaagatggttgctaatctggagaggattagaatgatgttggaagaagatacggggccc
atggttagttttagtagttgggcggcagctgctggaatcgacaagaaagtgttgcttgaa
aacttgcaatttggctggtgttgtagggatgagcttttgaaaagtacacgatcgctggtt
atatacattgcgaagaattacaacgggcaaggaatagccttcaaagatttaatccaggca
ggaaatgttggtgttcttcaaggcgcagaacggtttgaccgcagtagaggatacaaattc
tcgacttacgtacagtattggataaagaaatcattgttaatgttgctttcccggcattct
agagagatacggattcctttgacattgagcaaggctataagtcagatacagaaagcccgt
aaggcgctagctagcggggatggaagatggccagatgattgtgaggttgccaaattcaca
ggtctttcgttggcaaaaattggatcagctagcaattgccttcgagttgtgggttccatc
aatcagaacttttcgaatggcatcgatgcaaagttttgggaatgtatgcctgatccagcg
gcgatgactcctgaagaaattctgatgaagcaagatatgatgaacgaaatatacaaccga
atgagagatttagatgcaagggagaggatagtgttggttttaagattcgggctaaaaggg
tatcaacggaaaacactcgaggagatcgggaggtcgtttggagtaagcaaagaatggatt
cggagaatagaaaggagagcgttaacgaaactaaaagtcgatgatgaagaaacgctacaa
agtttaagacattatttgtacatatag
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