Cynara cardunculus var. scolymus (artichoke): 112522188
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Entry
112522188 CDS
T05604
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112522188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112522188
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112522188
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112522188
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112522188
NCBI-ProteinID:
XP_024987049
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Position
LG_11
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AA seq
269 aa
AA seq
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MSLLSKGDSIQIREVWNDNLEEEFALIQGVVDDFSYIAMDTEFPGIVLRPVGNFKNSNDY
HYQTLKDNVDMLKLIQLGLTFFDDQGNLPTCGTDKYCIWQFNFREFNVNDDVFANDSVEL
LRQSGIDFKENNEKGIDAHRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKVLTCQNLP
ETQSGFFSLINMYFPTIFDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
CTFRKLKDCFFSGSLEKYAGVLYGLGVEN
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttgtcaaaaggcgattcgattcagattcgagaggtgtggaatgacaatctc
gaagaagaattcgcattgatccaaggcgtagtcgatgatttttcctacatagcaatggac
accgaatttccaggaatcgttcttcgtcccgtcggaaatttcaagaacagtaacgattat
cattaccagacgttaaaagacaacgtggacatgctcaaattgatccaattagggttaact
ttcttcgatgatcaaggaaatctaccaacctgtggaacagataagtattgcatatggcaa
ttcaatttcagagaattcaatgtgaacgatgatgtttttgcaaatgattccgttgagctt
ttgaggcaaagtggtattgattttaaggaaaacaacgaaaaggggatcgatgcacataga
tttggtgagttattgatgtcatctgggattgttttgaatgatggtgttcattgggttact
ttccatagtggttatgattttgggtatttgttgaaggtgttaacttgccagaatctgcct
gaaacacaatctgggttctttagtttgatcaatatgtatttccctaccatttttgacatt
aagcatttgatgaagttttgcaacagtcttcatggtgggttgaataagctagctgaactg
ttggaagttgaaagaattggtgtttgccatcaggctggttccgatagtttgcttactgct
tgtactttcagaaagttgaaagattgtttctttagtggttcgctggagaagtatgccggt
gttttgtatggtctaggtgttgagaattaa
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