Cynara cardunculus var. scolymus (artichoke): 112522424
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Entry
112522424 CDS
T05604
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112522424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112522424
Spliceosome [BR:
ccav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112522424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Aladin
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR41
eIF2A
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
112522424
NCBI-ProteinID:
XP_024987291
LinkDB
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Position
LG 12:complement(10068986..10075082)
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AA seq
562 aa
AA seq
DB search
MEIDEKENPNPNATTLPPDSIVQIAPVEPPIPLVPTPIVPTIAPIPVLPPPPPPIPRPLA
PLPSIRPQNGDAAKPTNEEADSDEEGDGSGPEYEISEESRLFREKQEKAKQDFLMKQRAA
ALAVPTNDKAVRSRLRRLGEPVTLFGEREMERRDRLRMIMAKLDSEGQLERLMKVLEEEE
AAVNAVGMEDGGGEEEGEAIQYPFYTEGSMALLKARYEIAKDSVVKAAMRLGRARRKRDD
PDEDLDAEINWALENAKTFAMDCSEIGDARPLSGCSFSYDGKFLATCSLTGVAKIWSMPE
IKIASSLKGHTERATDVTFSPTNHHIATASADRTARLWNTEGTLLHTYKGHLDRLARVAF
HPSGKYLGTTSFDKTWRLWDTETGEELLLQEGHSRSVYGLTFHPDGSLAASCGLDALARV
WDLRSGRSILALEGHVKPVYGISFSPNGYHLATGGEDNTCRIWDLRKKRSLYTIPAHANL
ISQIKFEPQEGYFLVTASYDMTAKVWSARDFKPVKILSGHEAKVTSLDVVGDGQSIATVS
HDRTIKLWTSKNYEKEKTMDID
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgacgagaaagaaaaccctaaccctaatgccaccactttacctccagactcc
attgttcaaattgcaccagttgaacctccaattccactcgtcccaacaccaatcgtacca
acaattgctccaatccctgtacttcctccaccgccacctccaatcccacgtccacttgcc
cctcttccttctattcgtccccaaaatggcgacgctgccaagccaaccaacgaagaggca
gattctgatgaagagggtgatgggtcgggtcccgaatacgagatttcagaagagagcagg
ttgtttagagagaaacaggaaaaagcgaaacaggatttcttgatgaagcaacgtgctgct
gcactagcggtgcccaccaatgacaaagcggtgaggtctaggctaaggcggttaggggaa
ccggtgacactatttggtgagagagagatggagaggagggataggttgaggatgattatg
gcgaaattggattcagaagggcagttggaaaggctgatgaaagttttggaggaagaagag
gctgctgtgaatgcggtggggatggaggatggagggggtgaggaggaaggagaggcgatt
cagtatccattttatacggaggggtctatggctttgttgaaggcacggtatgagattgca
aaggattcagtggtgaaggctgcaatgaggctggggagagccaggaggaagagggatgat
ccggatgaagatttggatgcagagattaattgggctttggagaatgcaaagacttttgct
atggattgcagtgagattggggatgcccggcctctttcagggtgttccttttcatatgac
gggaagtttcttgccacctgttctttaaccggagttgctaagatatggagcatgccagaa
ataaaaatcgcgtcttcattgaaggggcataccgaacgggctactgatgttacattttct
ccaacaaatcaccacatagcaactgcttctgctgaccgcactgcaagattatggaatacc
gaaggaactctgctacacacatacaagggccatttggatcgccttgctcgtgttgctttc
catccatccgggaaatatttgggcacaactagcttcgataaaacgtggagattatgggat
acagagactggtgaagagttgctcctccaagaaggtcatagtagaagtgtgtatgggttg
acttttcaccctgatggctctctagccgcatcttgtgggctcgatgcacttgctcgtgta
tgggacctgcggtcagggagaagcatacttgccttggaaggtcatgtgaagccggtttac
ggtatcagcttttcaccaaatgggtatcatttagcaacaggaggtgaagataatacttgt
agaatttgggatttgaggaagaagagatcgttgtacacaattcctgcacatgctaatctt
atttctcaaattaaatttgagcctcaagagggatatttcttggtaactgcttcttatgat
atgactgctaaggtatggtcagccagagattttaagcccgtgaagatcctttctggtcac
gaagctaaagttacatctcttgatgtagttggggatggacaaagtattgccactgtttct
catgacaggacaataaaactatggaccagcaaaaattacgaaaaggagaagacaatggac
attgattaa
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