Cynara cardunculus var. scolymus (artichoke): 112522502
Help
Entry
112522502 CDS
T05604
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112522502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112522502
03110 Chaperones and folding catalysts [BR:
ccav03110
]
112522502
03029 Mitochondrial biogenesis [BR:
ccav03029
]
112522502
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112522502
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
112522502
Messenger RNA biogenesis [BR:
ccav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
112522502
Chaperones and folding catalysts [BR:
ccav03110
]
Heat shock proteins
HSP60 / Chaperonin
112522502
Mitochondrial biogenesis [BR:
ccav03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
112522502
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112522502
Exosomal proteins of other body fluids (saliva and urine)
112522502
Exosomal proteins of breast cancer cells
112522502
Exosomal proteins of colorectal cancer cells
112522502
Exosomal proteins of bladder cancer cells
112522502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Nuc_N
Motif
Other DBs
NCBI-GeneID:
112522502
NCBI-ProteinID:
XP_024987446
LinkDB
All DBs
Position
LG 1:10460128..10463557
Genome browser
AA seq
588 aa
AA seq
DB search
MASANAISTASIIYSPKQGSLRNGNGGISQLRTGQTMKQSHRRFAVRAAAKDIAFDQSSR
SAMQAGIDKLADAVGLTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELPDAMENAGAALI
REVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVHALIEELEKR
ARPVKGRDDIKAIASISAGNDDVIGSMIADAIDKVGADGVLSIESSSSFETTVDVEEGME
IDRGYISPQFVTNSEKLIVEFENARVLVTDQKISSIKDIIPLLEKTTQLRAPLLIIAEDV
SGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIMTGAEYQATDLGLLVENTSV
EQLGIARKITISKDSTTIIADAASKDEIQSRISQIKKELFETDSVYDSEKLAERIAKLSG
GVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAAFVHLSTLVPLIKEKLD
DADERLGADIIQKALVAPASLIAQNAGIEGEVVVEKVKASEWEMGYNAMTDKYENLVEAG
VIDPAKVTRCALQNSASVAGMVLTTQAIVVEKAKPRSGVAGAPQGMTV
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgctaatgcaatttctacagcttctataatctactcccctaaacaggggagt
ttgagaaatggtaatggaggtattagtcagttgcggactggtcagacgatgaagcaatcg
catcgccggttcgccgttcgagctgctgctaaagatattgcatttgatcagagttctagg
tcggctatgcaggccggtatcgataagcttgccgatgctgttggtcttactcttggccct
agagggaggaatgttgtcttggacgaatatggttccccaaaggtggttaatgatggggtt
acaattgccagagctattgagctacctgatgctatggaaaatgctggcgctgctctaatc
agagaggttgcaagtaaaaccaatgactcggctggtgatggtacaacaactgcatctgtt
cttgcacgtgaaattatcaaactcggtctcctgagtgtaacttctggtgccaacccggtc
tcaataaagaaaggtattgacaagacagtacatgctctgatcgaggagctggagaagaga
gctagaccagtaaaaggtcgtgatgatatcaaagccattgcctcaatttctgctggaaat
gatgatgttattgggtccatgattgctgatgccatcgacaaggttggagcagacggtgtg
ctatctattgaatcatcctcctcctttgagacgactgttgatgttgaagaaggaatggag
attgacagaggatatatctccccacaatttgttacaaactcggaaaaattgatagttgaa
tttgagaatgctcgagtgttggttactgaccaaaaaatatcttccataaaagacataatt
cccttgttggaaaaaaccactcaattgagagctcctttgctaattattgcggaggatgtt
agcggggaggctttggccactcttgtcgtaaacaagctgcgaggtatccttaatgttgct
gccatcaaggcccctggttttggtgagaggagaaaagccctgcttcaagatattgctatc
atgacaggagccgagtaccaagccacagacttgggtttacttgttgaaaatacctctgtg
gagcagcttggcatagccaggaagatcacgatcagcaaggactctacgaccatcattgct
gatgctgcatcaaaggacgagatacagtctaggatttcccagatcaagaaggagttgttc
gagacagattctgtctatgactctgagaaacttgctgagcgtattgcaaagttgtctggt
ggggttgctgttataaaggtgggtgctgcaactgaaacagagttggaggaccgcaagctt
cgtattgaggatgctaaaaatgcaacatttgctgccatagaggaaggaatagtacctgga
ggtggtgctgcattcgtccatctctcaaccttagttcctcttatcaaggagaagctcgat
gatgcagatgaacgtctaggagctgatattatccaaaaggcactggtggcaccagcatcg
ttgatagcacaaaatgctggaattgaaggggaggtggttgtggagaaggtaaaggcgagc
gaatgggagatgggttacaatgcaatgacagacaagtacgagaatttggtagaggctgga
gttatcgatccggcaaaggtgacgagatgtgcgctgcaaaattcagcttcggttgctgga
atggtcctgaccacacaggctattgttgtggaaaaggccaaacccaggtcaggtgtggct
ggtgcaccccaaggtatgacggtataa
DBGET
integrated database retrieval system
