KEGG   Cynara cardunculus var. scolymus (artichoke): 112522507
Entry
112522507         CDS       T05604                                 
Name
(RefSeq) protein transport protein SEC31 homolog B-like
  KO
K14005  protein transport protein SEC31
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    112522507
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112522507
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ccav02044]
    112522507
Membrane trafficking [BR:ccav04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    112522507
Secretion system [BR:ccav02044]
 Sec (secretion) system
  Eukaryotic Sec-SRP protein
   112522507
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_EML_2 WD40 WDR55 TPR_Sec16 Beta-prop_EIPR1 TPR_GEMI5 Beta-prop_EML Beta-prop_WDR90_POC16_2nd MIOS_WD40 SRA1 Prp18
Other DBs
NCBI-GeneID: 112522507
NCBI-ProteinID: XP_024987452
LinkDB
Position
LG 12:6827271..6842235
AA seq 1096 aa
MDTSACIKEVNRSASVAFAPEAPFIAAGTMAGAVDMSFSSSANLEIFQLDFQSDDHKLPL
VGAIPSSEPFNRLSWGKSPTSGSEEFSFGLVAGGLVDGNIGIWNPRLLISPEESESALIQ
QLSRHKGPVRGLEFSGLSPNHLASGAEEGEICIWDIAKPSEPTHFPPLKGSASAKQGEIS
FLSWNRKVQPILASTSFNGTTVVWDLRKQKPIISFSDSVRRRCSVLQWHPDFATQLIVAS
DDDSSPSLRIWDMRNTMSPLRELVGHSKGVVAMSWCPSDSSYLLTCAKDNRTICWDTGSA
EIVSELPAGTNWNFDVHWYPKIPGIISASSFDGKIGIYNIEACARYGAGENHFGSAPLRA
PKWYQRKAGVSFGFGGKLVSFHSTGSSGPSEVNVHDLVNEHNLVNTSSEFEAAMRSGDRS
SLRVLCDKKAQESESEDDRETWGFLKVMFEDDGTARTKLLNHLGFSLPAEVNENVQDLSQ
DVSSLSFEEHEAAKEGFVGGNQASNSPTDNGEDFFNNLPSPVSTPGKNTEEFAPSVDEPT
KESDLQGGVTEPSFDDAVQRALVVGDYKGAVAQCIAADKMADALVIAQVGGASLWESTRD
QYLKKNSSPYLKVVAAMVNNDLVSLVNTRPLKSWKETLALLCTFAQREEWTLLCDSLASR
LVTVGNTLAATLCYICAGNIDKTVEIWSKNVTAEHNGESYVDLLQDLMEKTVVLALATGQ
KRFSASLCKLVEKYAEILASQGLLTTAMEYLKLMGTEDLSPELVILRDRIALSSEPGKET
TGSVDFAHPHPQMGAVYGATQQPNPVVEPPRNYYQDESSYQRESYQQPPGPLYNTQFQQP
QQPSMFVPSPTAHIPPAGFNPPPVTTQPAPKVFVPSTPPIMRNADQYQQPPTLGSQLYPS
QVNPNPGYQPGPPGPASIGPVPSPMVPTSGPKISQGVTPPVRGFMPVNNTGLQRTSSAQM
QPSTPPQPAAPPAAPPTVQTADVSNVPGQQRAVIGTLTRLFNETSEALGGSNAVPAKKRE
IDDNSKKIGALFAKLNNGDISKNAGEKLVQLCQSLDRGDFATALKIQVDLTTSDWDECSF
WLATLKRMIKIRQTVR
NT seq 3291 nt   +upstreamnt  +downstreamnt
atggatacatcggcctgtataaaagaagtcaatagatcggcatcggtggcgtttgccccc
gaagcaccgttcattgccgccggcactatggcgggagctgtagatatgtcgtttagctcc
tccgcgaatctggaaatctttcaacttgacttccaatctgacgatcataagcttccctta
gttggcgctatacccagctccgaaccgtttaatcggttatcttgggggaaatctccgaca
tcgggttcggaagaattctcgttcggtctcgttgctggtggccttgtggatggaaatatt
ggtatctggaaccctcgacttcttataagtcccgaagaaagtgaaagcgctctaattcaa
caactatcgagacacaaagggcctgttcgtggtcttgagtttagtggtctttcaccaaac
catcttgcttctggcgctgaagaaggggaaatctgtatatgggatattgctaaaccctcg
gaacctacacatttccctcctctcaagggaagtgcgtcagctaaacagggtgaaatatct
ttcttatcgtggaacaggaaagttcagcctatcttggcatccacttcctttaatgggaca
actgtggtttgggacctcaggaagcaaaaaccgattataagtttttcagattcagttaga
agacgatgctctgttttacagtggcatcctgattttgccactcagctgattgttgcttca
gatgatgatagttcaccttctttgaggatatgggatatgcggaatacaatgtcaccattg
cgagagttggtaggtcacagtaaaggtgtggttgcaatgtcatggtgtcccagtgatagc
tcctacttgcttacctgtgccaaagataaccgcactatttgctgggacactggttctgct
gagattgtctctgaacttccagctggaaccaattggaattttgatgtacactggtatcca
aagataccaggaatcatatcagcttcgtcatttgatgggaaaattggcatttataatatt
gaggcttgtgctcgatatggtgctggtgagaatcactttggctcagcacctttaagagcc
ccaaaatggtatcaacgtaaagctggagtttcttttggttttggtggcaagcttgtttct
tttcactcaactggttcttctggaccttcagaggttaatgtgcatgacttggttaatgag
cacaatttagtgaatacctcatctgaatttgaagctgcaatgcggagtggagacagatct
tctttaagggttctatgtgacaaaaaagctcaagaatctgaatctgaggatgacagagaa
acatggggattcttgaaggtgatgtttgaagatgatggaacagcaaggacaaagcttcta
aaccaccttggcttcagtttgcctgcagaagtaaatgagaatgtgcaagatctgtctcag
gatgtaagttctctcagttttgaagaacacgaagcagctaaagaagggtttgtcggtggc
aaccaagcatctaattccccgactgataacggggaggatttttttaacaatcttccaagt
cctgtctcaactccaggaaagaatactgaagaatttgctcccagtgtggatgaaccgaca
aaggaaagtgatttacaagggggggtcactgaaccttcatttgatgatgctgtacaacgt
gctctggttgttggagattacaagggagctgttgcacaatgcatagctgcagataagatg
gcagatgctttagttatcgcacaggttggtggtgcgtccttgtgggagagcacacgcgat
caataccttaagaagaacagctctccttacttaaaggttgttgctgcaatggttaataat
gaccttgttagtctagtaaataccaggcccctgaaatcctggaaggaaacacttgctctc
ctatgcacttttgcacaaagggaggagtggactttactttgtgattcccttgcctctaga
ctcgtaactgttggtaatacgctagctgcgactctttgttatatatgcgctgggaacatt
gataaaacggtggaaatctggtcgaagaatgttaccgctgagcacaacggagaatcctat
gttgaccttcttcaggatttaatggagaagacagtggttcttgctttagcaactggacag
aagagattcagtgcttctttatgcaaacttgttgagaagtacgctgagatattagcaagt
caaggacttttgacaacggctatggaatatttgaagctaatgggcacagaggatttatct
cctgaacttgtgatcttaagagatcggatagccctctcgtctgaaccagggaaagagaca
actgggtctgtagattttgctcaccctcatccacaaatgggagctgtatacggtgcaacc
cagcaaccaaaccctgtggtcgaacctccccgaaactattatcaggatgagagctcttat
caacgtgaaagctatcaacaacctcctggtcctttatacaatacacagtttcaacagcca
caacaaccttccatgtttgttccatctcctacagctcacattccaccggcgggtttcaat
ccacctccagttacaactcaacctgctcccaaagtctttgttccttcaacccctccaatc
atgagaaatgctgaccaataccagcagcctcccaccttgggttctcagttatatccttct
caggtgaatccgaaccctggttaccaacctggaccacccggacctgcttcaattggccct
gtcccatctccaatggttccaaccagtgggccaaagatatcacagggtgtgacaccacca
gtgaggggatttatgcctgttaataatacaggattgcaaagaacatcctcagctcaaatg
caaccgtccactcctccacagcccgctgcacctcctgcagctcctccaactgtacagaca
gctgatgtatcaaatgtaccaggccagcaaagggcagttattggaacgttgacgagactt
ttcaacgagacatcagaagcattaggagggtcaaatgccgttccagctaagaagcgagaa
attgatgacaactcgaagaaaattggtgccttgtttgcgaaactaaacaatggtgatata
tcgaaaaatgctggtgaaaagcttgtgcagctgtgtcaatcattggatcgtggtgacttt
gccactgccctcaaaattcaggtggatcttacgactagtgactgggacgagtgcagcttc
tggttagcaacgctgaaacggatgatcaagattaggcagaccgtgagataa

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