Cynara cardunculus var. scolymus (artichoke): 112522518
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Entry
112522518 CDS
T05604
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112522518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112522518
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
112522518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
GLOD4_C
Motif
Other DBs
NCBI-GeneID:
112522518
NCBI-ProteinID:
XP_024987469
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Position
LG 1:complement(10337275..10341327)
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AA seq
256 aa
AA seq
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MAAKAGASPATYSPSPTTYKKNRPPIFTDVDWVRPDGRDFHQCRPAFLRTGAVNAASGSA
YAEFGNTKVMVSIFGPRESKKAMIYSDIGRLNCNVSYTTFATPVRGQASDNKEISSQLHK
SLEGAIMLDTFPKTTVDVFALVLESGGCDLPVVISCASLALADAGIMMYDLVAAVSVSCL
GKNLVIDPVSEEENYQDGGLMITCLPSRNEVTQLTITGEWSTPKIHEAMELCLDACSKLG
KIMRSCLKESSSTSQE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaagctggagcatccccggcgacgtactcaccgtctccaacaacctataag
aagaacagacctcctattttcaccgacgttgattgggttcgtcccgacggtcgtgatttt
catcagtgcagacctgcatttctacgaacgggtgccgtaaatgcagcatcaggatctgct
tatgcagagtttggtaataccaaggtcatggtgtctatatttgggcccagggaaagtaag
aaagcgatgatctacagtgatattggtcgcctgaattgtaatgttagttatacaactttt
gccactccagttcgaggacaggcatcagacaacaaagaaatttcgtcacagttgcacaag
tctttggagggtgccatcatgctagatacatttccgaaaacaactgtggatgtttttgca
ttagtattggaatctggaggatgtgatcttcctgtggtaatctcatgtgccagtcttgct
ttggcagatgcagggattatgatgtatgatttggttgctgcagtttctgtgtcttgtctc
gggaagaatcttgtcattgaccctgtttcagaagaagaaaactatcaagatggtggtctt
atgattacctgtttaccatctcgtaatgaggttactcagctaacaataaccggagaatgg
tctacccctaagattcatgaggcaatggaactatgccttgatgcgtgttcgaaactaggg
aagatcatgcgatcatgtttgaaagaatcctcctctacttcacaagaatag
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