Cynara cardunculus var. scolymus (artichoke): 112522591
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Entry
112522591 CDS
T05604
Name
(RefSeq) DNA-binding protein SMUBP-2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
Viral_helicase1
AAA_19
DEAD
AAA_22
ResIII
AAA
nSTAND3
RuvB_N
AAA_16
UvrD-helicase
UvrD_C_2
AAA_25
PhoH
PIF1
ABC_tran
NPHP3_N
T2SSE
AAA_33
RE_TdeIII
AAA_7
TPK_catalytic
AAA_5
Zot
DUF2786
Motif
Other DBs
NCBI-GeneID:
112522591
NCBI-ProteinID:
XP_024987593
LinkDB
All DBs
Position
LG 12:complement(5453619..5462164)
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AA seq
652 aa
AA seq
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MASTRNMKKSSSSSSKTISVEQFVSTMTPLIDMEKEAEISASMSSGANRNLDSASKKGST
ILNLKCVDVQTGLMGKTLLELQSNKGDVLPAHKFGTHDVVVLKPNKADLGAPALGQGVVY
RLKDSSITIAFDDIPEEGLNSPLRIEKVANEVTYRRMKDTLIQLSKGIQRGPAADLVPVL
FGERLPTVVKKDVSFTLFNKNLDHSQKDAIRKALSSKDLFLLHGPPGTGKTTTVVEIILQ
EVKRGSKILACAASNIAVDNIVERIVPHRVKLVRVGHPARLLPQVLESALDAQVLRGDNS
SLANDIRKEMKALNGKLLKAKDRNTKRDIRKELKMLSKEERKRQQLAVTDVIKNADVVLT
TLTGSLSRKLDGTSFDVVIIDEAAQALEVACWIALLKGSRCILSGDHLQLPPTVQSVEAE
KKGLGKTLFERLADLYGDEVMSMLTVQYRMHELIMNWSSKELYNSKIKAHASVAGHTLHE
LENVQKSSSAEPTLVLIDIAGCDMEEKKDEEESTLNEGEAEIAIAHAKRLVQSGVRASDI
GIITPYSAQVVLLRTLRTKEDKLKEVEISTVDGFQGREKEAIIISMVRSNSKKQVGFLSD
RRRMNVAVTRARRQCCIICDTETVSSDKFLKRLIEYFEENGEYLSGSGYGNE
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggccagcacaagaaacatgaagaaatcatcatcatcgtcatcaaaaacaatatccgtt
gaacaatttgtctctactatgacccctcttatcgatatggaaaaggaagctgagatatct
gcttcaatgagctctggtgctaatagaaatttggattctgcatcaaagaaaggatctacc
attcttaatttgaaatgcgtagatgttcagacggggttgatgggcaaaactcttcttgaa
cttcaatcgaacaaaggagatgttcttccagctcacaagtttgggactcatgatgttgtt
gttctaaaaccaaacaaggctgatttaggtgctcctgccctcggacaaggtgttgtttat
cgactgaaggattcatcaatcaccattgcttttgatgatattccagaagaaggtttaaat
agtcctttacgcattgagaaggtggctaatgaggtgacatatcgcagaatgaaggacaca
ttgatacaactaagtaaaggtattcaaaggggaccagctgcggacttggttcctgtctta
tttggagagagacttccaacagtagtgaaaaaggatgtctccttcactctgtttaataaa
aaccttgatcactctcagaaagatgccattagaaaagccctatcatcaaaagacctattc
ttgctgcatggacctcctggaactggaaagacaacaactgtggtggaaattatccttcaa
gaagtgaagcgtggatcaaagattcttgcttgtgcagcctctaatattgctgttgacaac
attgttgaacgaattgttcctcacagagtaaagttggtgagagtgggacatcctgcacgg
ttactacctcaagtattagagagtgctcttgatgcacaggtgttacgaggggataatagc
tctcttgcaaatgacatccggaaagaaatgaaggcattgaatggtaaattgttgaaagct
aaagacagaaacacaaagagggatattcggaaggagctcaagatgctttccaaagaagag
cgcaagaggcagcagttggctgtgacagatgtaataaaaaatgcagatgttgttctaacc
acactgacaggttcattgtcgcgaaaattagatggcacttcatttgatgtcgtgataatt
gatgaagctgctcaagcacttgaggtagcttgctggattgctctactaaagggttctagg
tgtatactttctggggaccatctacaacttcctccgacggtccagagtgttgaagctgag
aaaaaagggttgggaaagactctcttcgagcgccttgcggacttgtatggagatgaagtc
atgtctatgctcactgtccaataccgcatgcatgaacttataatgaactggtcgtccaag
gagctctacaacagtaagatcaaagctcatgcaagtgttgctggacatacgctacatgaa
ctcgagaatgtacagaaatcttcttcagcagaacctactcttgttctcatagacattgca
ggatgtgacatggaagaaaagaaggatgaagaagaaagcacattaaatgaaggtgaagct
gagattgctatagctcatgctaaaagactcgttcaaagtggagttcgtgcttctgatatc
ggaatcattaccccttattcagcacaggttgtattgcttagaacgctgagaactaaggaa
gacaagttaaaagaagtggaaatctcaactgtggatggcttccagggaagggaaaaagaa
gccattatcatttcaatggtcagatcaaactcaaagaaacaggtcgggtttctgagtgat
cgtagacgtatgaatgttgccgtgactcgtgcaaggagacagtgttgtatcatatgcgat
acagagacagtgagcagcgacaagttcctgaagcggttgatcgagtattttgaagagaat
ggtgagtacttgagtggttcagggtatggaaatgaatga
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