Cynara cardunculus var. scolymus (artichoke): 112522651
Help
Entry
112522651 CDS
T05604
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
112522651
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ccav04040
]
112522651
Ion channels [BR:
ccav04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112522651
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
112522651
NCBI-ProteinID:
XP_024987686
LinkDB
All DBs
Position
LG_12
Genome browser
AA seq
667 aa
AA seq
DB search
MEFFDPEGRFILQWNKTFLLFSVVALSLDPLFFYIPVVDGTQKCLDVDRKLEVVLCVLRS
FADMLYVFHIIIQFRTAYVPRYNHILGKRLFIDEPHYVARRYLKSYFVIDVLASFPLPQL
AVLVIIPNLDGPSSLLTKNLLKFIIFCQFVPRVIRLSLFYRKVTKISGFLTEKAWAGAAF
NFFLYVLASHVVGALWYLFAIESELRCWNIACQRHNYDSKYLYCGEGRVGDFGFLKSSCP
LLERNEIKDSANFDFGLFLDALQTRVLETSDFRQKFLYCSWWGLQSLSSLGQGLKASTYY
GEILFADFIAVIGLVLFALLIGNIQKYLQSFSNLTLRVEEMKEKRREAEELMSHVSLPEQ
LRERVRRHKQYKWKITRGVELNSFVRDLPRDLRRDIKRHLCLFSLRRVPLFEQMDEHLLD
AMCDGLKPVLYTETSRIIVEGDPVPEMLFITRGEVLSVTTDGGRTGFFNSITLRAGDFCG
EELLTWALDPTTPILPFSTRTVQAVTDVQAFALEADKLMSVASQFRRLHSRSLQHTFRFY
SQQWRTWAACYIQSVWRRHRRRKQLKTLKEQDRRLQDALATSRETSTLSIGASINVLRFS
SNALRFLRRKHIYNGEISTTKFQLLLPLKPVQPDFDNDTTTFTSRSDTGPDGTGPEQNRP
VNSFGHL
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggagttctttgatccagaggggaggtttattctgcagtggaacaaaacttttttgtta
ttttctgtggtagcactgtccttggatcctttgtttttctatattcctgtagttgatggc
acccaaaagtgccttgatgtggaccgcaagttggaggttgttttgtgtgttcttcgttct
tttgccgacatgttatatgtatttcacatcattatccagtttcgaactgcgtatgttcct
cgttataatcatatccttggaaagagattgttcatagatgaacctcattatgtggcaaga
cgttacctaaaatcgtacttcgtcattgatgtgttagcatcctttccccttccacagttg
gcagttttggtaatcatccccaacttagatggtccatcttcattactgacgaaaaacctt
ttgaagttcattatcttttgtcaatttgtccctcgagttattcggctttctttgttctat
cggaaggtgacaaaaatttctggcttcctcactgaaaaagcatgggccggagctgctttt
aacttttttctctatgtgctagctagccatgtagttggagccctttggtacttgtttgca
atagaaagcgagctcagatgctggaatattgcatgtcaaaggcataactatgactccaag
tatttatattgtggagaaggccgtgtgggagattttgggttcctgaaaagttcatgccct
cttcttgaacggaatgaaattaaggattcagcaaactttgattttggcttattccttgac
gctcttcaaactcgtgtgttagaaacaagcgacttccgccagaaatttttgtattgttca
tggtggggtttgcagagtctaagttctcttggtcaaggccttaaggcaagcacttactat
ggggagattctatttgctgactttattgctgtcattgggttggttctatttgctttgctt
attggcaacatacagaaatacttgcagtcgttttcaaaccttactctcagagtggaggag
atgaaagaaaaaaggcgagaagcagaggagctcatgtcacatgtttccctccctgagcag
ttgagggagcgagttagaagacacaaacagtataaatggaagataactaggggtgttgag
ttgaattccttcgtcagagaccttcctcgagatctgaggagggacataaaacgtcatctt
tgcttgttttcactaaggagagtacctctttttgagcaaatggacgaacatttgttggat
gctatgtgtgatggtctgaagccagttctttacacagagactagccgcataatcgtagag
ggagatccggtacctgaaatgctcttcattacacgtggtgaggtactaagtgtaacaact
gatggtggaaggactggcttcttcaactctattacactccgggctggtgacttctgtgga
gaagagcttctcacgtgggctttggatcctacaactccaatacttcccttctcaactaga
acggtgcaagcagttacagatgttcaagcttttgctctagaggctgataaactgatgtcc
gtggcatcccagtttaggcgtctccacagcaggagtctccaacatacttttagattctac
tcacagcagtggaggacatgggcagcctgctacatacagtctgtgtggcgtagacatcgt
agaaggaagcagctaaaaaccttgaaggagcaagataggagactgcaggatgccttggcc
accagcagggaaacctccaccctcagcattggtgcctccatcaatgtgctcagattttcc
tccaatgcattacgtttcttgaggcggaaacatatatataatggagaaatatcaacaact
aagtttcagctcctgctcccgctgaagccagtccagcctgattttgataatgacaccaca
acctttacctctaggtcagacacaggaccagatggaaccggtccagagcagaaccgaccc
gttaactcatttggacatctttag
DBGET
integrated database retrieval system
