KEGG   Cynara cardunculus var. scolymus (artichoke): 112522660
Entry
112522660         CDS       T05604                                 
Name
(RefSeq) protein pleiotropic regulatory locus 1
  KO
K12862  pleiotropic regulator 1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112522660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112522660
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112522660
Spliceosome [BR:ccav03041]
 Complex B
  Other components
   Prp19 complex
    112522660
 Complex C
   Prp19-CDC5 complex
    112522660
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    112522660
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_EIPR1 NBCH_WD40 WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_DCAF12 Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_WDR11_2nd WDR54
Other DBs
NCBI-GeneID: 112522660
NCBI-ProteinID: XP_024987700
LinkDB
Position
LG_12
AA seq 478 aa
MPGPTMESELPVEPQSLKKLSFKSLKRALDLFSPLHSQLPPPDLESKKIRMSHKLHVEYG
GIKTVPNQPAKNASQNQVEPSNSNALVLPGTESSKKNGTQSDLALTPVQPKNTGDGNLTG
KSTAVIPVHGTSDRNLSTAALMERIPSRWPRPVWHAPWKNYRVISGHLGWVRSIAFDPSN
QWFCTGSADRTIKIWDVGSGRLRLTLTGHIEQVRGLAVSTRHTYMFSAGDDKQVKCWDLE
QNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSV
FTRPTDPQVVTGSHDSTIKFWDLRYGRTMATLTHHKKSVRALAQHPTEDSFASASADNIK
KFSLPRGDFLHNMLSQQKTIINAMTVNEEGVLATGGDNGSLWFWDWKSGHSFQQSQTIVQ
PGSLDSEAGIYALSYDITGSRLITCEADKTIKMWKEDENATPETHPVNFKPPKDIRRF
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgccagggccaacaatggagtcagaactgccagtggaaccacaatcactgaagaagctc
agctttaaatccctgaaacgggctctcgatctcttttctcctcttcattctcaattgccc
cctcctgaccttgagagcaagaagatacgtatgagccataagctacatgttgagtacggt
ggaataaaaaccgttccaaaccagcctgccaaaaatgcctcgcaaaatcaagttgagcct
tcgaactcaaatgctctggtgctaccaggaactgaaagctctaagaagaatggtactcag
agtgatttagcccttactcctgttcaaccaaagaacacaggcgatggtaacttgactgga
aaaagtactgccgtcattcctgttcatgggacttcagacaggaatctctcaactgcagcc
cttatggagagaatccctagcaggtggccacgtcctgtatggcatgctccatggaagaac
tacagagtcatcagtggccatttgggatgggtgagatctatcgcatttgatccaagtaat
cagtggttctgcacgggctctgctgatcgaacgatcaagatctgggatgtgggatcagga
agattaaggttgacactcacagggcatatagaacaagttcgaggccttgctgttagcact
aggcacacctacatgttctctgctggtgatgacaaacaagttaaatgctgggatctagaa
cagaacaaggttattcggtcatatcatggccatctaagtggtgtatattgcttagcactt
catccaactattgatgttctgcttactgggggtcgtgattctgtttgccgggtatgggac
attcgcagcaagatgcaaattcatgctctatctggtcatgacaatacagtttgttcagtt
tttactcgacctacggatcctcaagttgtaaccggctcccatgattcaaccattaagttc
tgggatcttagatatggtagaacaatggcaactcttacccatcataagaaatcagtgcgt
gcattggcccagcatcctaccgaggatagttttgcttctgcatcagctgacaacataaaa
aagttcagccttccaagaggagactttttgcacaatatgctttcccaacaaaagaccata
attaatgctatgacagtcaatgaagagggtgtgttggctacaggaggcgataatgggagt
ttgtggttctgggactggaaaagcggtcatagttttcaacaatctcaaacaatcgttcaa
cctggttcactggatagcgaggctggaatttacgcattatcttacgacataacaggctcg
aggctcattacatgtgaagccgacaaaacgatcaaaatgtggaaagaagacgaaaacgca
acccctgaaactcatcccgtcaacttcaagccaccgaaagacatccgtaggttttaa

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