Cynara cardunculus var. scolymus (artichoke): 112522893
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Entry
112522893 CDS
T05604
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112522893
03083 Polycomb repressive complex
112522893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112522893
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
112522893
Histone modification proteins
HAT complexes
HATB complex
112522893
HDAC complexes
Sin3A-HDAC complex
112522893
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
112522893
PRC2.2
112522893
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
112522893
Heterochromatin formation proteins
Other heterochromatin formation proteins
112522893
Chromatin remodeling factors
NuRD complex
112522893
NuRF complex
112522893
NuRF complex (fruit fly)
112522893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
CAF1C_H4-bd
WD40
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_HPS5
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_EML
WD40_RFWD3
MIOS_WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
ANXE1_4th
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
112522893
NCBI-ProteinID:
XP_024987989
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All DBs
Position
LG 12:39359485..39361962
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AA seq
400 aa
AA seq
DB search
MRTEEDSGGDDYQLEEEFGVWKKNTPFLYDLIISHSLDWPSLTVQWLPSLPSSYQDASFA
VHKLILGTHTSDENPNFLLVAEVHLPVNPSSSMNTNIQDPHIPKVEIIQKIHVDGEVNRA
RCMPQNPSIIAAKTSSSEVYLFDSMKQLSNHEGDYCEPDMRLRGHEKEGYGLSWSPFREG
YLLSGSNDCKICLWDVSAMPVDKVLDAKYIYEDHGSVVGDVSWHLKNDSLFGSVGDDCKL
MIWDLRTNKHEQSVVVHEKEVNYLSFNPHNEWVLATASSDTTVGLFDMRKLTSPLHVLSS
HTEEVFQVEWNPKHETVIASSGDDRRLMVWDLNRIGDEQLEGETEDGPPELLFSHGGHKA
KISDFSWNENEPWVISSVAEDNALQVWQMAETIYNEDDDI
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaggacggaggaagatagcggcggcgatgactaccaactggaggaggaattcggtgta
tggaagaagaatactccatttttgtacgatctcatcatctctcactcccttgattggccg
tctctcaccgtccagtggctcccatcactgccctcttcgtatcaagacgcctcttttgct
gttcacaaattgattctaggtactcatacctccgatgagaatccgaacttcctcctcgtc
gcagaagtccacttgccggttaatccttcatcttctatgaatacaaatatccaagacccc
catatccctaaggtagagataatccagaaaatacatgttgatggggaggtgaaccgggca
cgatgtatgccacagaatccgtctattattgctgcaaagactagttcttctgaagtgtat
ctattcgactccatgaagcagctctcaaatcatgaaggagattactgtgaacctgacatg
agattgaggggtcatgagaaagaaggttatgggctgtcatggagcccttttagagaaggg
tatctcttgagtggatctaatgattgcaaaatatgcttgtgggatgtgtctgcaatgcct
gtggataaagttcttgatgcaaaatacatttatgaggatcatgggagtgtggttggagat
gtatcatggcatctgaagaatgatagtttatttggatcagttggggatgattgcaaacta
atgatttgggacttgcgcacaaataaacatgaacaatctgttgtagttcatgagaaagag
gtgaattatttatctttcaatccacacaacgagtgggttttggctacagcatcttcagat
accacagttggtctatttgacatgagaaaattaacatcacctctgcatgttttgagtagt
cacacggaggaggtgtttcaagtagagtggaacccaaagcatgaaactgtgatagcgtcg
tctggagatgacagaaggttgatggtttgggacctaaacaggatcggagatgagcaactg
gaaggagaaactgaagatggacctccagaactgttgttctctcatggtggtcataaagca
aagatatcagacttttcatggaacgagaacgaaccatgggtgatatctagtgtggctgaa
gacaatgctctgcaagtatggcaaatggctgaaactatctataatgaagacgatgacatt
taa
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