Cynara cardunculus var. scolymus (artichoke): 112522998
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Entry
112522998 CDS
T05604
Name
(RefSeq) RNA-binding protein 25 isoform X1
KO
K12822
RNA-binding protein 25
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112522998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccav03041
]
112522998
Spliceosome [BR:
ccav03041
]
Complex A
U1 snRNP components
U1 related factors
112522998
Complex B
112522998
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PWI
RRM_1
Motif
Other DBs
NCBI-GeneID:
112522998
NCBI-ProteinID:
XP_024988160
LinkDB
All DBs
Position
LG 12:1045015..1055021
Genome browser
AA seq
982 aa
AA seq
DB search
MANSTNSPEKTITEQQNPTQPPAPDNPKQPNSDLPDSSTAQPSAILATTANATVVALNPN
LNNLQPTPLQPTGIPPPPQIQPFVPPSQLSTVPPSFRPATPSVPLPTAPQFSPIPNPNFQ
NHGIQGQGQVQVQPPGVMMPPPSQSSGMMSSVQQMMPPQYGQPGQQPMRMYAPMPNGYQM
AVPQGTMNPPGILRYAPPPYPSMLRPAYPQRPLGAVGVIPALPRPPMMPMRGPVVPTIVR
PAINPTITPTEKPMNMVYVGKIASTVDNDFMLSLLQLCGPVKSWKRVQDTGGFKGFGFCE
FESPEGVLRALRMLNKLSIDGQELMLNFDHATRKYLKLYVEKKKDNFKNLKATDTEGSGK
GEGNASGLEKNEPSESSVEESKDISKEEKKEDDNNESNKEIKDIATFGLVTNEDKEADRE
ASEKITGMIEERIKNKPLPPPPSPPQTAPDVPGNSTSEHPARSRDGDSDVDITRTVEDRN
GEEMTSKSKPSGENERPETSSPDRSNKNDRRSKDRERDLKREKERELERYEREREQERAK
REREREYKIREDERRYRARLKEWESREKEKERARKQEREREKDREQDRKYEILDQENDDG
YSKKRKYRSSGEEREERKRRLREKEEDMDDRIKEEEEIAEAKRKAEEEREQQKEQQKHAL
ELLSSNATNGAENAMLIDGGLLDIRNKAVDQTTDGEVAHGNEIDSRIIQNGTGDDSAVGS
AAASEMRQSNTVTTKKLGFGLVGSGKRTTVPSLFHEEEDEDAQKDKKMRPLVPIDYTTEE
LQAVQDTAPVAPSPLAAAAEFAKRIGNANSKEERPDSERERSRRSHDRSSHRDRDRNFEE
ANRSRDETRKEPIERERGSEKAKTPDNKKLLDAKQLIDTIPKTKDELFSYPINWATYDKN
GLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVTADEMLDRLQSILDDEAEMFVLK
MWRMLIFEIKKVETGLAGRSKT
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattcgacaaactcaccggagaaaacaattacagagcagcaaaaccctacacaa
ccaccggcgcctgataatccgaagcaaccaaattcggatctgccagattcgtctaccgca
caaccgtcggcaattctcgccaccaccgcaaacgccacagtagtagcactaaaccctaac
cttaataatttacaaccaacaccactgcagccgacgggaataccgccgccgccgcagatc
caaccttttgtgcccccttcgcaactctctactgtccctccgtctttccggccagcaacg
ccgtcggttccgcttccaactgctcctcagttctctccgatacctaaccctaattttcag
aaccatggaattcaaggtcaaggtcaggtccaggttcagccgccaggcgtgatgatgccg
ccgccgtcgcagtcaagtggcatgatgtcttcggttcaacaaatgatgccgccgcagtac
gggcagccaggtcagcaaccgatgaggatgtatgcgccgatgcctaatggttatcaaatg
gctgtccctcagggaacgatgaatcctccaggaatccttcgttatgcccctcctccgtat
ccatcaatgcttcgacctgcatatcctcaacgaccacttggagcagtgggagtcattcca
gcattgccacgccctccaatgatgcctatgcgaggtccagtggttcctacaattgtaagg
ccagccatcaatccaaccataactccaactgaaaagccgatgaacatggtttatgttggc
aagatagcatcaacggtggacaatgatttcatgctctcccttttgcaactctgcgggcct
gttaaaagttggaaacgtgttcaagatactgggggtttcaagggctttggattttgtgaa
tttgaatcccctgaaggagttttacgtgctttacggatgctgaataaattaagtattgat
ggtcaggagctgatgttgaattttgatcatgcaacccgaaagtatcttaaactctatgtt
gagaagaaaaaggacaacttcaagaatctgaaagcaacggatactgaaggttcgggtaaa
ggggaaggaaatgcatccgggcttgagaagaacgaaccttcagagtcttctgtggaggaa
tcgaaggatatttcaaaggaagagaaaaaggaagatgataacaatgaatcaaacaaagaa
attaaggacattgctacctttggccttgtgactaatgaagataaggaagctgatagagaa
gctagtgaaaagattacaggaatgatagaagagaggataaagaataaacctctaccacct
ccgccttcacccccacaaactgctcctgatgttcctggaaattcaacatctgaacatcca
gcaaggtcgagagatggcgattcagatgtggatattacgagaactgtggaagatagaaat
ggtgaagaaatgaccagcaaaagcaaaccttcaggtgaaaatgagagacctgaaacaagc
tcaccggaccgaagtaataagaatgataggaggagcaaagaccgagagcgagacctgaag
cgtgaaaaggaaagggaattggaaagatatgaaagagagagggagcaagaacgagctaag
agagagagggaaagagaatacaagatacgtgaagatgaacgccgatacagggcacgcctg
aaggagtgggaatctagagaaaaagagaaagagagggcacgcaaacaggagagagaaagg
gaaaaggatagggaacaagataggaaatatgagatattggatcaagaaaatgatgatggt
tatagcaaaaagagaaaatacagaagtagtggggaggaaagagaagaaagaaaacgcagg
ctaagggaaaaggaggaagacatggatgacaggattaaagaggaggaggagattgctgag
gctaagaggaaagctgaagaagaaagagagcagcagaaagaacaacaaaaacatgccttg
gaacttttatctagtaatgcaactaatggagctgagaatgctatgttaattgatggaggc
ttgttggatatcagaaataaggctgttgatcagactacagatggtgaggtggcacatggg
aacgagattgatagtaggattatacagaatggaactggtgatgattcagctgtgggatct
gctgcagcatcagaaatgaggcaaagcaacaccgtcaccacaaaaaaattaggatttggt
cttgtaggctcaggaaaaagaactactgttccttctcttttccacgaagaggaagatgag
gatgcacagaaggacaaaaagatgcggcctttggttcctatagattacacaacggaggaa
ttgcaagctgtgcaagacacagctcctgtcgcaccttcacctttggcggcagcagctgaa
tttgcaaaacgaattggaaatgcaaattcaaaagaagagagacctgattcagaaagggaa
cggagtagacgttcccatgataggtctagccatcgggatagagatcggaattttgaggag
gctaaccggtccagagatgaaaccagaaaagaaccaatcgagcgtgagcgtggatcagag
aaagcaaagacaccggataataagaagcttttggatgcaaaacaattaattgacaccatt
ccaaaaaccaaggacgaattgttctcttatccgataaactgggcaacttatgacaagaat
ggattgcatgaaaggatgagaccatggatctcgaagaagataacagagtttttgggtgag
gaggagacgactctggtagattacatcgtgtcgagcactcaagaacacgtgacagcagat
gagatgctggatcggcttcagtctatactggacgacgaagctgaaatgtttgtgcttaaa
atgtggaggatgctgatttttgaaatcaagaaagtggagactgggcttgctggaagatcc
aaaacttga
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