Cynara cardunculus var. scolymus (artichoke): 112523195
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Entry
112523195 CDS
T05604
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112523195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112523195
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112523195
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112523195
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112523195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
112523195
NCBI-ProteinID:
XP_024988471
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All DBs
Position
LG 12:6143393..6154462
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AA seq
955 aa
AA seq
DB search
MEGTSFLTSRSIGFRPSHNDSVLPLANNCNQKSLTPICDRFKGLLKEREEDIRVSSGRHD
EIEIPSPSSEEIVELYEIVLSELTINSKPLITDLTIIAGEQREHGGGIADAICARIIEVP
VEQKLPSLYLLDSIVKNIGRDYVRHFSARLPEVYCLAYRQIHPNMHPSMRHLFGTWSTVF
PSSVLCKIEAQLQFSPSASHQSSGLKASESPRPAHGIHVNPKYLEARRQFENSTTDSKIQ
QARATSTSEILEQPSSGFDEYESDSREALSSHTGSRKLDLSSNVGRNPFSLGHARPPSPS
LDEFALDDSPKKVVEGTSSSHEYGRRPHGMAVKDEDLRDWQRPQQSDGALPQIETTASHC
ISNGFDIQRPRALIDAYGTDERNKTTNPKLQHTKNLITNGLGGKSAGQTWQNTEEEEFEW
ENMSPTLVDRGPATDPAPGAYRANQSTFAKTDLSRGNWSNQELIHSVAPNHAVSSSDHGL
KRKISGFHNEPSDNPVSHYPQESWNLSHDQPWATLHHYNPRGQRPPLIDSFPRANAHHLL
SLTPRMNSSSVNMMNPEVSIPSSKGSWRSSLNMQTSQPVPPFKKHIRSQFDMLKTGNSAA
NENVSFLHQPFDVNENRVPNQLPQMHSQQAGLVSNQQRPKFPPHLSLPQEVRSNMVPPAL
AFNPSHTTIQPMFRGYTPQRFDTSGGASMNPVHGMQSSMPFLGVGFPPLPPGPPPSSFPL
KQIPQFPPSVAPTPPAGGALSGLFSSLVAQGLLSLTKPSSEQACVGLEFDPDVLKTRHES
AITALYADLPRQCKTCGLRFKLQEEHSNHMDWHVTKNRVSKNHKQKPSRKWFPNASMWLS
GTEASGADAVPGFLNPSENVVEKKDDEDMAVPADEDQNVCALCGEAFDDFYSDETEEWMY
RGAVYMNAPTGSVLGMDRSQLGPIVHSKCRSESAVAPPDDFGNNGRVCIREHTRS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggagggtaccagttttctgactagtagaagtattgggttcaggccgtcacacaatgat
tcggttctcccgttggctaataactgtaatcagaagtcactaactccgatttgtgatcga
ttcaagggtttgttgaaggaacgagaggaagatattagggtttctagtggacgacatgac
gagattgagattccgtcgccgagtagtgaagaaattgttgagttatatgaaattgttttg
tcggagttgactatcaattcgaaaccgctcattactgatctcacgataatcgctggagag
cagagagaacatggtggtggcattgcggacgccatttgtgcaagaattatcgaggttcca
gttgagcaaaaacttccttctctatatcttcttgatagtattgtcaaaaatatcggtaga
gattacgtgaggcacttttctgctcgtttgcctgaggtctattgtttggcatacaggcaa
atccacccaaatatgcatccttccatgcgccatctttttggcacctggtcaactgtattc
ccatcttctgttctttgcaagattgaagctcaactacagttttctccctcagcaagtcat
caatcttcgggtttaaaagcttctgaatctccacggccagctcatggtatacatgtcaat
ccaaagtacttggaagcaagacgtcaatttgaaaactcaactacagatagtaaaatacaa
caagcaagagcaacttcaacttcagagattcttgaacaaccctcctcaggatttgatgaa
tatgaatctgatagtagggaggcactgtcgtcacatactggatcacgcaagttagattta
agtagtaacgtgggtcgtaatcctttcagtcttggccatgcaaggcctccatcaccatcc
ctagatgaatttgctttggatgattctcctaaaaaggttgttgaaggaacatcatcatct
catgaatatggtcgtagacctcatggcatggcggtcaaagatgaggatttacgtgattgg
cagagaccccagcagtccgatggcgccttgccacagattgaaacaactgcttcacactgt
ataagtaacggatttgacattcagagacccagggccttgattgatgcttatggaacagat
gagaggaataaaacaacgaacccaaagctccaacacacgaaaaacttaattacaaatgga
ttaggtggtaagagtgctggacagacgtggcagaatactgaagaagaggagtttgaatgg
gaaaatatgagtcccacgttagtagaccgcggtcctgctactgatcctgcccccggagcc
taccgagccaaccagtctacgtttgcaaagactgatttgagcagaggcaattggtctaac
caggagctgattcattcagttgcccctaaccatgcagtttcgtcgtctgatcatggatta
aagcggaagattagtggatttcacaacgagccatcagataatccagtttctcattatcca
caagaatcatggaacctttctcatgatcagccttgggctactctgcatcattacaatcct
cgtgggcaaaggcctccgctcatcgatagctttccacgtgccaacgcacatcatctcttg
tcgttgacacctagaatgaattcgtcaagtgtcaatatgatgaatccggaggtctctata
ccatcatcgaaaggatcttggcgatcctcactgaatatgcaaacatctcaaccagttcca
ccttttaagaaacatattaggagtcagtttgacatgttgaagaccggcaattcagcagca
aatgaaaatgtgtcgtttttgcatcaaccatttgatgttaatgaaaatagagtaccgaac
caactacctcaaatgcatagtcagcaggcggggttggtttctaatcagcaaagaccaaag
ttcccacctcatttatcgctaccccaagaggttcgatcgaatatggtaccacctgcttta
gcttttaatccgtcacatacaacaatacaacccatgtttcgtgggtatacccctcaaaga
ttcgacacctctggaggtgcttctatgaatccagttcatggtatgcaatcttctatgcct
tttcttggtgtcggtttcccccctctacctccaggcccccctccttcctcttttcccctg
aaacagattcctcaattccctccatcagttgctccaacccctccagcggggggtgcactc
tccggcttgtttagttctcttgtggcccaaggtctgctctctctgactaaaccgagttct
gaacaggcctgtgttgggcttgagtttgatccagatgttctcaagacacgtcacgagtct
gcaataactgctttatatgctgatcttccacggcaatgcaaaacttgcggtcttcgattt
aagttgcaagaagaacacagcaatcatatggattggcacgtcaccaaaaatcgagtatca
aaaaatcataaacaaaagccttctcggaagtggttccctaatgctagtatgtggcttagt
gggacagaagcatcgggagctgatgcagttccgggatttcttaatccgtctgaaaatgtt
gttgaaaagaaggatgatgaagacatggctgttccagcggacgaagatcagaatgtttgt
gcactatgcggtgaggcgtttgatgatttttacagtgatgaaacagaagaatggatgtat
agaggtgcggtctacatgaatgctccaacgggatctgttttaggcatggatagatctcaa
cttgggccaatagttcattctaaatgccgatctgagtctgctgtggcccctcccgatgat
tttggcaacaatggacgggtatgtattagagagcatacacggagttag
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