Cynara cardunculus var. scolymus (artichoke): 112523373
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Entry
112523373 CDS
T05604
Symbol
LOC112523373
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112523373 (LOC112523373)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112523373 (LOC112523373)
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112523373 (LOC112523373)
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112523373 (LOC112523373)
mRNA degradation factors
3'-5' decay
Ski complex
112523373 (LOC112523373)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
AAA_16
Motif
Other DBs
NCBI-GeneID:
112523373
NCBI-ProteinID:
XP_024988719
LinkDB
All DBs
Position
LG_12:complement(37075849..37093082)
Genome browser
AA seq
1373 aa
AA seq
DB search
MDRIDTVKELPFRVGFTGHSGHIRIEPLPPVQQSSPINSLPEFILPPAFARETPESIKTL
VEDKYLLPRLDPDEFSAENSGRQWEFEWFDQAKIHLEPTLPRSVVVPAWELPFRRPERAS
ELEKWEPASVQVDVSELMVEAENSIGVRISGPPKDFVKGSINNRPFRPGGLDDSQSMGRT
FPEGASNGEWVREVLNGAPAQVIPPSFKEGMDLGELKGHPCSWIIHEDQSVPKTTSESTL
SVQFDDLFKRAWEEDVTELAIDGETSELEIEVIEAGSPKSISPEVENKSDLPVGALDSES
SVIDQILSTGSEGLGKGLDDSGDGGRQQPNEAKDDSSDGGRQQPEAKVWAVTGGSDGIAD
HFDELVPDMALDFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCT
RAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIR
DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKQI
RVTGTTKRPVPLEHCLFYSGELYKICELEKFIPQGLKAAKDVYKRKNMGTPVGGGSGTYP
SLPAAHASVHSQKPNSFMRGKQNRQSGPQNLGNFVGAGRGNQNYSGGNNNWGSRISEKSL
WLSLINKLSKTSLLPVVIFCFSKNRCDKSADNLRETDLTSRSEKSEIRIFCDKAFSRLKG
SDRNLPQIVRVQGLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKILFSTETFAMGVNAPA
RTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDNIGTVLVMCRDEIPEESDLKLVI
TGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLSQP
TKVIECIKGEPAIEDYYGWYLEAEMYSNQITETIMQSSVCQPFLMPGRVVVVKSQSGEDH
LLGVILKAPSSSNNKQYIVMMLTPSLPATLQSSSSGDASQKKTTAGIQILIPKSKRGMDD
DYYSSATARKGTGVVNIKMPHRGSAAGANYEVREIDTKEFLSICNAKIKIDQVGLLENDS
NAAYSKTVQNLLDKKSNGNKYPPALDPLKDLKLKDLNLVEVYYRWNNLLQKMSENKCHNC
VKLGEHIKIAREIRKYKEEVNALKFQMSDEALKQMPDFQGRIDVLKEIGCIDTDLVVQIK
GRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQRNASEPSLTPRMSQAKQ
RLHDTAIKLGELQAHFKIQIDPHEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGL
IVRTIVRLDETCREFKNAAAIMGNSALCKKMEAASNAIKRDIVFAASLYITGL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatcgacacagtgaaagagttgcctttccgggtcgggttcaccggtcacagc
ggccatattcgaatcgagccgctacctcctgttcaacagtccagccccattaactcgcta
ccggagtttatacttccacctgcatttgctagggaaacaccagaatcaatcaaaacgctt
gttgaggataaatatctcctcccaagattggatcctgatgaattttctgccgaaaactct
ggaaggcagtgggagtttgagtggtttgatcaagcaaaaattcacttagagccaacattg
ccacgctctgttgtagtacctgcatgggaattaccatttagacggccagagcgtgcatca
gagcttgagaaatgggaacctgcatctgtgcaggttgatgtgtcagaactcatggtagaa
gcggagaattctattggtgtgcgcattagtggacctccaaaggattttgtgaagggaagc
attaacaaccgtccttttcgtccaggtggtttggacgattctcaatccatgggaaggact
tttcctgagggtgcttcaaatggtgaatgggtacgggaagtgctgaatggtgctcctgcc
caagtcatccctcctagttttaaagaaggaatggatctcggagagctcaagggacatcca
tgttcttggattattcatgaagatcagagtgtgcccaagacaacatctgagagtacttta
tctgtccagtttgatgacttatttaaaagagcttgggaagaggatgttacggaactagcc
attgatggagaaacatcagagttagaaattgaagtaatcgaggccggatctcccaagtcc
atttcaccggaagttgaaaacaagtcagatcttcctgttggtgcacttgactctgaatca
tctgttatagatcagattttgtcaactggatctgaaggattgggtaaaggattggatgat
tctggtgatggtggtcgacaacaaccaaatgaggcaaaggatgattctagtgatggaggt
cgacaacaaccagaggcaaaagtctgggctgttactggaggtagtgatgggattgcagac
cattttgatgaacttgttcctgacatggcattggatttcccttttgaactagatgcattt
caaaaggaggctatatattatcttgagaagggggaatcggtttttgttgcagctcataca
tccgcaggaaagactgttgttgcagagtatgcctttgcactagcatcaaagcactgcacg
agagcagtatatactgctcccatcaaaacaatcagcaaccaaaagtacagggatttttct
ggaaagtttgatgttggtcttctcactggggatgttagcttgaggccagaggcttcctgc
ctcatcatgacaactgagatattaagatcaatgctttacaggggcgctgatatcatacgt
gacattgaatgggttatatttgatgaagtgcattatgtaaatgatgttgaaagaggggtt
gtttgggaagaggttatcatcatgcttccaaggcatatcaattttgttctcctctctgcc
acggtacctaatacaattgaatttgccgattggattggcaggacaaagcaaaagcaaatc
cgtgtaactgggactaccaagaggccagtcccgttagagcactgccttttttattctgga
gaactctacaaaatctgtgaactcgagaagtttataccccagggactgaaagcagctaaa
gatgtctataagagaaaaaatatgggcaccccagttggtggtggttctggaacatatcca
tcacttccagcagctcatgccagtgtccactctcaaaaacccaacagttttatgagggga
aaacaaaacaggcaatctggtccccagaacttggggaactttgttggtgctggtcggggc
aatcaaaactacagtggtggaaacaacaattggggttcaagaatatcagaaaaatctctg
tggttgtcactcattaataagctgtcaaagacatcccttttacctgtggtgatattttgc
ttctcgaagaatcgctgtgacaaatcagccgataatctgcgtgaaactgacctcacaagt
cgttctgagaagagtgaaattcgcattttctgtgacaaagcattttcgcggctaaaggga
tctgacaggaacctaccacagattgtcagagtccaaggtcttcttcacagagggattggt
gtacatcatgccggcctgctcccaatagtcaaggaagtagttgaaatgcttttctgtcgt
ggcgttattaagattttattttcgactgagacatttgcaatgggggttaatgcgccagct
agaacggttgtttttgataccgtaaggaagtttgatggaaaggaatttagacagttacta
cctggagaatacacacagatggctggccgtgctggtaggagagggcttgataatattggt
actgttcttgtgatgtgtcgtgatgaaatcccagaagagagtgatttgaagcttgtcata
actggcagtgcaaccaggcttgaatctcagtttcggttgacatatatcatgatattgcat
ctccttcgtgttgaagaattgaaggtggaggacatgctgaaaagaagttttgctgaattt
catgctcagaaaaaactgccagagcaacagcaattgttgatgcgaaagctttctcagcct
acaaaagttatcgagtgcataaagggtgagccagcaattgaggattactatggatggtac
ttggaggctgagatgtacagcaaccagataactgagactattatgcagtcttcagtttgt
cagccttttcttatgccaggaagagtggtggttgtgaaatcacaatctggagaggaccac
ttactaggagttatcttaaaggcaccttcctcctccaataataaacaatacatcgttatg
atgcttacaccatctttaccagctacattacaaagttcctcaagtggtgatgcttcacaa
aagaaaacaactgctggtatccagatattaataccaaaatcaaaacgtggtatggatgac
gattattattcttctgccaccgcacgcaagggaacaggtgttgtcaacattaaaatgccc
caccgtggtagtgctgctggggctaattatgaggtccgagaaattgatactaaagaattc
ttatctatatgcaatgccaagattaagatcgatcaagttgggcttttggaaaatgatagc
aatgcagcttattccaaaacggtacaaaatcttttagataagaaatccaatggaaacaag
taccctccagccctcgatccacttaaagatttgaagctgaaagacttgaatctagtggaa
gtttactacagatggaataacctattgcaaaagatgtcagaaaacaagtgccacaattgt
gttaagttgggggagcacataaaaatagctagagagataaggaagtataaagaggaagtt
aatgcactaaaatttcaaatgtcggatgaagcacttaagcagatgcctgattttcagggt
cgtattgatgtcctcaaggagattggctgtatagatacagaccttgtggttcagatcaaa
ggccgggttgcctgtgagatgaattcgggagaggaattgatatgcacagagtgcttattt
gagaaccagttggatgatttggaaccagaagaagctgtggcgttgatgtcggcttttgta
tttcagcagaggaacgcttctgaaccttctcttactccgagaatgtcacaagctaaacaa
aggttgcacgatacagctatcaaacttggcgagcttcaagcacatttcaaaatacagatt
gaccctcatgagtatgctcgagagaatctcaagtttggacttgttgaagtcgtttatgaa
tgggcaaagggtactccatttgcggatatatgtgaactgactgatgtccctgaagggctt
atcgtaagaaccatcgtgcggctggatgaaacatgtcgtgaattcaaaaacgctgcagcc
atcatgggtaactctgcgttatgcaagaaaatggaagccgcttcaaatgccataaaacgc
gatattgtttttgctgctagtttgtacattactggcttgtag
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integrated database retrieval system
