KEGG   Cynara cardunculus var. scolymus (artichoke): 112523423
Entry
112523423         CDS       T05604                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112523423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112523423
   03041 Spliceosome [BR:ccav03041]
    112523423
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112523423
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112523423
Spliceosome [BR:ccav03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112523423
SSDB
Motif
Pfam: RRM_1 RRM_7 AbiGi
Other DBs
NCBI-GeneID: 112523423
NCBI-ProteinID: XP_024988782
LinkDB
Position
LG 12:31078963..31083328
AA seq 419 aa
MDLSKKRKTEENGVLYTTAGANDVVAPPPSLSSLSLTPLDARKILEPFSKEQLLDVLQTV
IIRDVAVLDAVRSIADSDPTQRKLFIRGIGWETTTEKLRSIFSGFGELDEAIVITDKTTG
KSKGYGFVTFKHIDGAILALKEPSKKIDGRITVAQLAAARESGSVDVSMRKIYVGNVPFE
ISSERLLSHFSSYGEIEEGPLGFDKQSGKQKGFAFFVYKTEEGARNSLVDPMKNIDGHQV
MCKMATDGKKGKVGGPQRPSGMPGDAVPPPGSMPGSMNTGYGMPGGLTSFGGYSGGRPLP
PHQNSQMNSSVPSAVGGGQGFGNQGPPSYSGGSGYGGGGGYSGGGFTSGSHFGGGAASGE
YPGINTFGSSMNRMPPTSGGYPDSGNYGSSSAYPTQMHQPPAGPRGPTGQMYQGGPPYY
NT seq 1260 nt   +upstreamnt  +downstreamnt
atggacctttcgaagaagagaaagaccgaagagaacggcgttctatacacgacggccggc
gccaacgatgtcgttgctccgccgccgtcactttcgtctctcagtctcactcccctagac
gcacgcaagatcctcgaaccgttcagcaaagaacagcttcttgatgtcttgcaaactgtc
atcatccgcgacgttgctgttttagacgccgttcgttctatcgcagattctgaccccacc
cagcgtaaactctttatccgtggcatcggctgggaaactaccactgaaaagctccgatcg
atcttttcgggttttggagaacttgacgaggctattgtcattaccgacaaaaccacaggc
aaatcgaaaggttacggttttgttacttttaagcatatagacggtgccattttggctttg
aaggaacctagcaagaagatagatggtcgtattacggttgcgcagttagcggcagctagg
gaatcgggtagtgtcgatgtgtcgatgaggaagatttacgttggcaatgttccttttgag
atttcgtcggagagattgttgagccatttttcatcgtatggggaaattgaagaagggcca
ttagggtttgacaagcagtcggggaagcaaaagggatttgcgttttttgtgtataagacg
gaggaaggggcgaggaattcacttgttgatccgatgaagaacattgatgggcaccaagtt
atgtgtaaaatggctactgatgggaagaagggcaaagtaggtgggccccagagaccatct
ggaatgcccggtgatgctgttccgcctccgggatcgatgccagggtccatgaatactggc
tatggtatgccgggaggtttaacatcttttggtgggtattcgggtgggcgtcctcttcct
cctcatcaaaattcacagatgaactcatcagtgccttcagcagttggcggtggtcaggga
tttggtaatcaggggccaccctcttatagtggtggcagtggctatggtggtggtggtgga
tatagtggtggtggattcaccagtggctcacactttggaggtggggctgcctctggggag
tatcctgggataaatacttttgggtcgtctatgaatagaatgcccccaacatcaggagga
taccctgatagtggcaattatggatcgtcttcggcttatccaacacaaatgcaccagcca
ccagctggtccaagaggcccgacaggccagatgtatcaaggcgggccaccttactattga

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