Cynara cardunculus var. scolymus (artichoke): 112523462
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Entry
112523462 CDS
T05604
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112523462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112523462
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112523462
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112523462
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
112523462
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_RBM22
zf-CCCH_4
zf-CCCH_UNK
Motif
Other DBs
NCBI-GeneID:
112523462
NCBI-ProteinID:
XP_024988848
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Position
LG_12
Genome browser
AA seq
259 aa
AA seq
DB search
MEDGEGGLSFDFEGGLETGTRQPTASVPVIRQSDDLNSNNNKAPSASPLNLNSFSVDPAA
SAAAASTSFSGRRSYRQTVCRHWLRGLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQ
DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEVLRNIQHLTSYNYGNS
NRFFQNRSANHPQQSEKSQLPQDVNGVNQLIRPATTGSAFQSVLLPPLQQHQQQIGQSQQ
QCPLPQGASRCVQRSKVFN
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggaggatggggagggaggtctaagcttcgacttcgaagggggtttggaaacaggaaca
aggcaacctaccgcgtccgtaccagtaatccgccaatccgacgatcttaacagtaataac
aataaggcaccatcggcttcgccactcaacctcaactcgttttccgtcgaccctgctgct
tctgccgctgccgcttccaccagcttctctggaaggaggagctaccgtcaaaccgtgtgc
cgccactggctccgagggctctgtatgaaaggtgaggcgtgcgggtttcttcatcagtat
gataaatcacgaatgcctatatgtagattctttcgcttgtacggagagtgccgagagcag
gactgcgtttataagcacaccaacgaagacatcaaggagtgtaacatgtacaagttcggg
ttttgtccaaatggtcctgattgtcggtatagacatgcaaaactaccgggacctcctcct
ccggtggaagaagtactccgaaatattcagcatttaacttcctacaactatggaaattct
aataggtttttccagaaccggagtgccaaccaccctcagcaatcagaaaaatctcaactt
ccacaagatgtgaatggtgttaatcaactcatcagacctgccacaacgggttctgctttt
caatctgtgcttctgccaccactgcagcagcatcagcaacagattggacaatctcagcaa
cagtgccccctgcctcaaggagcctctaggtgtgttcagagatctaaggttttcaattag
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