Cynara cardunculus var. scolymus (artichoke): 112523517
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Entry
112523517 CDS
T05604
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1
KO
K14485
transport inhibitor response 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112523517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112523517
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112523517
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
DUF7885
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
112523517
NCBI-ProteinID:
XP_024988909
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Position
LG_12
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AA seq
594 aa
AA seq
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MDPNQKRAKAVDRVDSVDTGAASSESTRMCPFPDEVLERVLSLIGSHKDRSSVSLVCKDW
YNAERWSRRHVFIGNCYSVSPEIVAARFPRIRSVTLKGKPRFSDFNLVPEDWGADVHPWL
SVFSTAYPFLEELRLKRMAVSDESLEFLATNFQGFKALSLLSCDGFSTDGLKAIATNCKN
LTELDVQENGIDDLGGHWLSCFPESLSSLEILNFASLNSEVSFDALEKLVSRCKSLRVLK
VNRNVSLDQLQKLLLQAPQLMELGTGTFMQELVSGPVTELKNTFSNCKHLVTLSGLWDAT
PLYLPVIYPACARLTFLNLSYATLRSIELANLLTHSKSLRRLWLLDTVGDKGLEAVGSCC
PLLEELRVFPADPFDQEIFLGVTESGFVSVSRGCPKLRYVLYFCRQMTNAAVATIAQNCP
DFTHFRLCIMNPGQPDYLTKEPMDEAFGAIVKTCTKLQRLAVSGLLTDRTFEYIGKYAKN
LETLSVAFAGSSDLGMEYVLGGCPKLRKLEIRDCPFGNAALLSGLTKYESMRSLWMSACN
VTMNGCRELAKEKPRLNVEVMKDEGSDDSQAHKVYVYRTVAGPRRDAPPFVLTL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaatcagaagagagccaaagcggttgaccgagttgactcggtggatacaggc
gcagcatcgtccgagtcgactcggatgtgcccattcccggacgaggtcctagaacgggta
ttgtcgctgataggctcccacaaggaccgcagctcggtatcactcgtttgtaaagactgg
tacaacgccgagcggtggagtaggcgccacgtgttcatcggaaactgctattcggtgtcg
ccggagattgtggccgctaggtttccgaggatacggagcgtgactcttaagggaaaacct
aggttttcggattttaatttggtaccggaggattggggagctgatgttcatccatggctg
agtgttttctcgacggcatatccgttcctagaggagctccggctgaagagaatggctgtt
agcgacgagagtttggagttcttggcgacaaattttcaaggttttaaagctctgtcgtta
ttgagctgtgatgggttcagtactgatggattaaaagccattgctactaattgcaagaac
ttgacagaactggatgttcaggagaatgggatcgatgatctgggtggccattggttaagt
tgctttccggaaagcttatcctcattagaaattcttaattttgcgagcttaaacagtgaa
gttagtttcgatgcccttgagaagcttgtttctagatgcaaatctttaagggttttgaaa
gttaatcggaacgtaagtttggatcaattacaaaagcttcttttgcaggctccacagttg
atggagcttggtactggaacctttatgcaagaactcgtctctggtccagtcaccgagctc
aaaaatacgttcagtaactgtaaacatctagtcactctttcgggcttatgggacgctacc
ccactttatctcccggttatttatcctgcatgtgctcgtttgacgtttttgaatctgagt
tatgcaaccttacgcagcattgaacttgccaatcttcttactcattctaaaagccttcgt
cgcctttggcttcttgatactgtaggtgataagggtctagaagcagttggatcctgttgc
cccttactcgaagagctacgagtctttccagctgacccatttgaccaagaaatcttcctt
ggcgtgaccgaatccgggttcgtgtccgtttctcgtggctgcccgaagctccgttatgtc
ctctacttctgccgccaaatgacaaatgctgctgtcgccaccattgcccagaactgcccg
gatttcacccacttccgcctctgcataatgaatcccggtcaaccagattacctgaccaag
gagccaatggacgaagcctttggtgcgattgtcaagacctgtaccaagcttcaacggctt
gcggtttccggcctcttaactgacagaacattcgagtatatcgggaaatacgctaaaaac
ctagaaacactttctgttgcttttgcaggaagtagtgatttggggatggagtacgtatta
ggaggctgcccgaaactgagaaagctcgagatacgagactgcccgtttggtaacgcggca
ttgctttcgggtttgaccaagtacgagtcaatgcgatccttgtggatgtcagcttgcaat
gtgacaatgaatgggtgcagggagttggctaaagagaaacctcggttaaatgttgaggtg
atgaaagatgaaggtagcgatgatagtcaggctcacaaagtttacgtctatcgaaccgtg
gctggaccacgaagggatgcaccaccttttgttctcaccctctga
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