Cynara cardunculus var. scolymus (artichoke): 112523678
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Entry
112523678 CDS
T05604
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112523678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112523678
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112523678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DUF7140
Motif
Other DBs
NCBI-GeneID:
112523678
NCBI-ProteinID:
XP_024989133
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All DBs
Position
LG 12:complement(10042367..10047540)
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AA seq
1070 aa
AA seq
DB search
MSTISSSCIAKRTRLQRHLLLQEWCCGSSSDQSRKRNREIGVSEQEFDEVIDVDSYWIKK
KRASKTVNGSGISFRLNIRLEKSIKSEEEESDKEESDGVEEIDDIEFPKIVTESNGYGSA
SSFKTGKHTYFFYSSDDSDSNDTIIVLDDIEDTDEDFQTFCKYHDRKQTDMKTCFYDRST
EEDEPSSFSESESDNSENWDFLLNKILNQSTSNTNTGLYQSTKDDERSSSIESENDNSHD
SDFLPRVRKTNQPRNRKQSHKKNMEEKVLFGSVDRKEKNHSVPKAITKKMDKNPTHCSSD
SDTKGKTNAKHKANGVKHRERKSKRVLQEENGGSIDVILDSIIRNGGIHGKEGDDDDDDY
RLPLRFRFDDSEDESLNRKTDDSDVEGLFREMDFELECEEIGSYKTSTVENRGKDDYKGK
NEEDIEPSHFELCQRGEHDDVYFEEQTGMRCGLCGAVILESRFAISKLANYAPDRSKRSY
VSNEQQFSSSENLHFEASDWNLCEKTEGTFWDLIPTRIQTRLYPHQQEGLKFLWENLAGT
VEISRLQKLDSRKGGGGCIISHAPGTGKTLLTIVFIESFLKTFPKCCPVIVAPASMLLTW
EAEFKKWRMGFSFINLNNLDLLSNEMVNGDMKRKKDLIRAMKISSWSNGGSVLGVSYSLY
EKLAGNAKNPNLEKMGNLLLDVPRLVVLDEGHTPRNQSSNIWNTLLKLKTKNRVILSGTP
FQNNFRELFNTLRLVRPATAVGIENEKIFADMIQQKNGTKSRGCRSGSEDIEKLKTIISP
FVHVHKGHILESKLPGLKQSVILLNPPPFQKRFIVNLENLSKTLEYEHKVALVSVHPSLL
LHCSLSETEEKLTKTRELEKVRLHPDLGVKTRFVMELIRLSISLNEKVLIFSQYIPPLEL
LKDQIALTFAWEEGREIMIIKGKIHQKVRQTIINGFNDPNSKVKVLLASTKCCSEGIHLI
GASRVILLDVVWNPSVERQAISRAYRLGQTKVVYTYHLMAAGTTEEEKYDRQVAKGRLAE
LVFSSSTSSSAMDDEQGGGMEVNDKILQEMMDHQQLKDMFKKIRYPEKEP
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccatttccagctcatgtatcgcaaaacgaactcgccttcaacgacaccttctt
ttgcaagaatggtgctgtggttcttcaagcgaccaatctcgaaaacgaaacagagaaata
ggggtttctgaacaagaatttgatgaagttattgatgtagatagttattggattaagaag
aagagagcttctaaaacagttaatggatccgggatctcttttagattaaatataagactc
gagaaatcgattaagtcggaagaggaagaaagtgacaaggaagagagcgatggggtagag
gaaatcgatgatatcgagttcccaaagattgtgacggagagcaatggttatggttcggca
agttcctttaaaaccgggaagcacacatactttttctactcgtcggatgactcagattca
aacgatacaatcatcgttcttgatgacatcgaagatactgatgaagattttcaaacattc
tgcaaatatcatgatcgaaagcaaaccgatatgaaaacatgcttctatgatcggtctact
gaagaagatgaaccatcgagttttagcgaaagtgagagcgataactcggagaactgggac
tttttgctaaacaagatactgaaccagtccacgagtaatacaaacacgggcttgtatcaa
tctactaaagatgatgagcgatcgagttccattgaaagcgagaatgacaactcacacgat
tcggattttttgccacgagtacggaagacaaaccagcccagaaataggaagcaatcacat
aagaagaacatggaggaaaaggttttatttggatcagttgacagaaaagagaagaatcat
tcggtaccaaaagcaataacgaagaaaatggacaaaaatccgacgcattgttcgagtgat
tctgatacaaaaggaaaaacgaatgcgaaacataaagcgaatggtgtcaaacatcgagaa
cgtaagagtaaacgagtcctgcaagaagaaaatggtggatctatagatgttatcttggat
tcgatcattcggaatggaggcattcatggcaaagagggtgatgatgacgatgatgattat
cgtcttcctttacgattcagatttgatgacagtgaggatgagtcattgaatcgaaaaaca
gacgattcagatgttgaaggtctgtttcgggagatggattttgagctcgaatgtgaagaa
ataggttcctacaaaacttcaacggttgagaatcgaggtaaagacgattacaaaggcaag
aacgaggaggatatcgaaccatctcatttcgaactttgccaaaggggggagcacgacgat
gtttactttgaagaacaaacgggcatgagatgtggtttatgtggagctgttattctcgag
agcagatttgcgatatcaaaactcgcaaactatgcaccagatagatcaaaaagaagttat
gtttctaatgaacaacagttttctagctctgaaaacctgcattttgaagcttcagattgg
aatctatgcgagaaaaccgaaggcacattctgggatctcattcctaccaggattcaaacc
cgtttgtatccccatcaacaagaagggctcaagtttttgtgggaaaatttggcgggaacg
gtcgagatttcaagattacagaaactcgattcgcgaaagggtggtggtggctgcatcata
tcgcatgctcctggaaccggtaaaaccctcttgaccatcgtgtttatcgagtcctttctc
aagacatttcccaagtgttgtcccgtgatcgtggctccggcgagcatgcttttgacgtgg
gaagccgagttcaagaaatggcgaatggggttttcgtttatcaaccttaataacttggat
cttttgagcaatgagatggtgaatggcgatatgaaacgtaaaaaagatttgatccgtgcg
atgaagattagttcttggagcaacggtggaagcgtgcttggcgtgagttacagtttgtac
gaaaaactagctgggaacgcgaagaacccaaatcttgaaaaaatgggaaaccttttgctc
gatgtgccgagattagtcgttcttgatgaaggacacacgcctcggaatcaaagtagcaac
atctggaacacacttttgaagcttaaaaccaaaaaccgcgtgattctatcaggaaccccg
tttcaaaacaacttccgggagttgttcaacactttgcgattagtaagacctgcaaccgcg
gttggaattgagaacgaaaagatttttgcagatatgattcaacagaagaatggtacgaaa
tctagaggttgtaggtcgggttctgaagatatagagaagcttaaaacgatcatttcgcct
tttgttcatgtccacaaaggccatattctcgaaagcaagcttccggggttaaaacaaagt
gtcattctgctgaatccacctccgtttcaaaagcgattcatcgtaaatttggaaaattta
tcgaaaactttggagtatgaacataaagtcgcgttggtttctgttcatccctctcttctc
ctccattgctcgttatccgaaacagaagaaaagttaacaaaaacacgagaactagaaaaa
gtaagacttcatcctgatcttggagtgaaaacaaggttcgttatggagcttattcggctc
agcatttcgttaaacgaaaaagttttgatcttcagccagtatatcccgccgttagagctg
ttaaaagaccaaatcgccctcacgtttgcttgggaggaaggaagggagatcatgatcatc
aaaggaaagatacatcagaaggtcaggcaaacgatcatcaacggtttcaacgatccaaac
agtaaagtgaaagttttgctggcatcgacgaaatgctgctccgaagggattcatctcatc
ggtgcttcaagggtcattcttttggatgtcgtttggaacccatctgtggaaagacaagcg
atcagtagagcttatcggctcgggcaaacgaaagtggtgtatacgtaccatctgatggcg
gccggaacaaccgaggaggagaagtacgatagacaggtggcgaaagggcggttagcggag
ctggttttttcttcttctacttcatcttctgccatggatgacgagcagggtggtggtatg
gaggtgaatgataagatcttgcaagaaatgatggatcatcaacaactgaaagatatgttc
aaaaagatcagataccctgaaaaagaaccgtga
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