Cynara cardunculus var. scolymus (artichoke): 112524114
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Entry
112524114 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112524114
KO
K08518
syntaxin-binding protein 5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112524114
Membrane trafficking [BR:
ccav04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112524114
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
112524114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WD40
WD40_Prp19
WDR55
Synaptobrevin
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
112524114
NCBI-ProteinID:
XP_024989537
LinkDB
All DBs
Position
LG 13:complement(12905835..12927963)
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AA seq
1126 aa
AA seq
DB search
MFTKLFHRNPQQSSPPEPPEDVPQLKDFEPRVVVHYGIPSTASILAFDPLQHLLAIGTQD
GRIKVIGGDNIECLLISPKPVPLKNLEFLQNQGFLVSVSNENVVQVWDLERRCLASNLRW
ESNISAFSVVCGTNYMYVGDEYGYLSVLKYDIEEGNIQHMPYQIPPDLIADEAGIQIPDQ
QSVVGLVAQPCTSGKRVLIAYQNGVIILWDVSEDKAVLVRAHKDLQLKDEIIIRSTSDVK
RESLSYKSEDEQAEKEISALCWVSSDGSMLAVGYVDGDILLWNLSTTISTKDQKANKSSN
NAIKLRFSSGDRRLPVIVLRWSANSAHNGNGGQLFVYGGDDIGSEEVLTILNLDLSSGLE
ALKSIKRSDLTLNGPYADIVLVPGVGASESSYTTLFVLTSPGQLHVYDDDCLSGLISAPE
KHAVNAVQCSVTLPTVEPYMTITKLCSIQKDGNLQRVLKETVLAAKHELASSTTTGSAQW
PVSGGFPSQLSSDENIGVERIYIAGYQDGSVRIWEATFPVFSQIFVLTFQVEGTEVPGAS
APISSLDFNSTTSSLAVGNDCGLVHLLKLVGESEEKNAYLVTETKREEIDLHHGNGWQST
AVFSLLDSPVRSLQYTFSGSRIVVGHECGKVAVLDVQSSSVVFLTDLLVSSSSPVVSLAM
KTYSQTDTDDSEQSGNTSPSDPPKEVAFILTKDAQIILVDSSSGKKICSQSVNPKESAAI
SLYILEEKFSVPELSVQNTVNSSQDSTDGKESLQSHTEPDSDSTEVNISSEGIELWKNFV
DSLILVCCEDSMLLYSTKSLIQGEPDFICKVDLEKQCCWTTIFKKNELESGVVLVYSTGV
VEIRSLPDLKVLAETSIMSILRWNFMTNMENTMSSSGNGHITMVYGRELAIISLFTSEND
FRIPEALPRLHDKDVAEAAEAALKFSLSQKNKQTAPTGLLGGIIKGIKREKENENVNIEE
TRDVLVPKLEALFSRAPFSVSDLDLGDDFDEPIKSGSTLRENFDEPIKLVVERIEVEPKS
PTLSPQTQSQTETNKQTERDRLLEGGSAITEPKARTAEEIKAKYRKTATGDTAAMALEAK
DKLLERQMKLEKLKENSEELASGSENFASMAEQLAKQMENRKWWQL
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgtttaccaaattatttcatagaaatcctcaacaatcttctccacctgaaccacctgag
gatgttccacaattgaaagactttgaaccacgtgttgttgttcattatgggattccatct
actgcatcaatcctggcctttgacccccttcagcatctactggctataggcacacaggat
ggcaggataaaggtgattggcggtgataacattgaatgccttctaatatctcctaagcca
gtgcccttgaaaaacctagagttcttacaaaaccaaggttttctggtcagcgtctcaaat
gaaaatgtagtacaggtttgggatctagaacggaggtgtttggcttctaatttacggtgg
gagtccaatataagtgcattctctgtagtttgtggcactaattacatgtatgttggagac
gagtatgggtatttgtccgtgttgaagtatgacattgaagaagggaatatccaacacatg
ccctaccagattcctcctgatctcatagctgatgaagctgggattcaaatacctgatcag
cagtctgttgtgggcctggttgcccaaccttgtacctccggcaaaagagtgctgattgca
tatcagaatggagtgataatattatgggatgtttctgaagataaggctgtacttgtcaga
gcccataaagatctccaactgaaggatgaaataattattcgttctacaagtgatgtcaaa
cgtgaaagtctcagttataaatcggaggatgagcaggcagagaaggagataagtgctctc
tgttgggtttcttctgacgggtcaatgcttgctgttggttatgtagatggagatattctg
ttatggaatttatcaactacaatctctaccaaagatcaaaaagcaaataaatcatctaat
aatgccattaagttaagattttcttcaggtgacagaagactcccagtcattgttctgcgt
tggtctgcaaacagtgctcataatggtaatggaggtcaactttttgtctatggaggtgat
gatattggatcggaggaagtcctaacgatcttgaatcttgatttgtcatctggactagaa
gctctgaagagtattaagcgctcagaccttacgcttaatggtccttatgcggatatagta
ttggtacctggtgttggtgcatctgagagtagttatactacactttttgtgttgaccagc
ccaggacaattgcatgtttatgatgatgattgcttgtctggactaatatctgctccagag
aagcatgctgtaaatgcagttcagtgctctgtaactttaccaacggttgaaccatatatg
actatcacaaagctctgttcgatacaaaaagatgggaatttacaaagagttctaaaggag
acagttttggctgcaaaacatgaactagcatcttctacaactacagggagtgcacagtgg
cctgtgagtggtggctttcccagtcaactatcctcagatgaaaatattggagttgagaga
atatatattgcagggtatcaagatggctccgtccgaatatgggaggccacatttccggtt
ttctcacaaatttttgttctaactttccaggtggaaggtaccgaagttcctggtgcaagt
gcaccaatatcatccttggattttaactctacaacatcaagcttagctgtcggcaatgat
tgtggtctggttcatctacttaagctagttggagaatctgaagaaaaaaatgcatacctt
gtgacagaaaccaagcgtgaagaaattgatttgcaccatgggaatggatggcaatcaaca
gccgtattttctcttctagattctcctgtgcgaagtctacaatatacattttctggatct
agaattgttgttggacatgaatgtggtaaggttgccgtactagatgttcaatcatcatca
gtagtgtttcttacagatcttttagtcagctctagttctccggtcgtttctctggccatg
aaaacatattcacaaactgatactgatgattctgagcaatctggaaacacatctccaagt
gatccaccaaaggaagtggctttcatattgaccaaagacgcacaaatcatccttgtggat
agtagtagtggtaaaaaaatctgctcccagtcagtaaatccgaaggagtcagctgcaatc
tctttatacattttagaggaaaagttttctgtcccagaattgtcggtacagaatactgtg
aactcatcccaggactccacagatggaaaggagtctttacagtcccacactgagccagac
agtgattcaactgaagtaaatatctcgagtgaaggcattgaattgtggaagaattttgtt
gactcgctgatcttagtttgttgtgaggattcaatgcttttatactcaaccaagtctcta
attcagggggagccagacttcatctgcaaagttgatttagagaaacaatgttgctggact
actatcttcaagaaaaatgaactggaatcaggagtggttttagtatattcgactggggtt
gttgagatcaggtccttgccagaccttaaagtgctggcagaaacttctataatgtccatt
cttagatggaacttcatgactaacatggagaacacaatgagttcttctggtaatgggcat
ataacaatggtgtatgggcgtgaacttgctattatatctcttttcacctctgaaaatgac
ttcaggatcccagaggctctacctcgtcttcatgataaagatgttgcggaagctgcagag
gctgctcttaaattctctcttagccagaagaacaaacagactgcaccaacaggactactt
ggtggtatcatcaagggcataaagcgagaaaaagaaaatgagaatgtgaatattgaagaa
actcgagacgttcttgttcctaagctagaagccttgttttctagggcacctttttcagtt
tcagatttagatttgggagatgactttgatgaaccaatcaaatcaggttctacattgaga
gagaactttgatgagccaatcaaattagttgtagagagaatcgaggtcgaaccgaagtcc
cctacactatctcctcagactcagagccagactgagacaaacaagcaaacagagagggat
agattacttgaaggtggctctgccataacagaaccaaaagctaggacagcagaggaaatc
aaggcgaaatatcgaaagactgcgactggggatacagcagccatggcactagaagcaaaa
gacaagcttctcgaacgccaaatgaaacttgagaaactaaaagaaaactcggaagaactg
gcaagtgggtccgagaacttcgcatcaatggcagaacagcttgcaaagcaaatggagaat
cgaaagtggtggcagctgtga
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