Cynara cardunculus var. scolymus (artichoke): 112524186
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Entry
112524186 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112524186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524186
03012 Translation factors [BR:
ccav03012
]
112524186
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112524186
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112524186
Translation factors [BR:
ccav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112524186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
NACHT
AAA_19
nSTAND3
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
112524186
NCBI-ProteinID:
XP_024989674
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All DBs
Position
LG 13:complement(28578315..28594319)
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AA seq
1188 aa
AA seq
DB search
MPCSAIFVHNYLRLSLNPLRTSSFQLRRRLTLSPRLVRPLPPLSSPALVLTCSSSSHVSS
SNLVIKKTGNRDSYSSPYFYQQSLPYSRYAYDEYASEEESDREHLQSSPSLGASTLDNIE
EWKWKLTTLIRNKNEQELVSRERKDRRDFEQISALATRMGLHSRQYAKVVVFSKVPLPNY
RSDLDDKRPQREVVLSPELHSRVDYHLKSYLSQKSVLGDGYPNNVLPTSSTSSSLVIEEG
LHEQNEPLRRSPVAEGILRRKSLQLRNIQQDWKESAEGQKMQELRRSLPAYKEKEALLNA
ISRNQVIVVSGETGCGKTTQLPQYILESEIDAARGALCSIICTQPRRISAMSVAERVAAE
RGEKLGDSVGYKVRLEGIKGRDTRLLFCTTGILLRRLLLDRSLRGVTHVIVDEIHERGMN
EDFLLIVLKELLPRRPELKLILMSATLNAELFSSYFAGAPMIHIPGFTYPVRSYFLENIL
EMTGYRLSTYNQIDNYGQEKSWKMQKQTVRKRKSQIASAAEDALEAADLRDFNPRTRDSL
SCWNADSIGFNLIENVLCHICRKERPGAVLVFMTGWDDINSLKDQLQSHPLLGDPTKVLL
LACHGSMDSSEQKLIFNRPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALN
NTPCLLPAWISKASARQRRGRAGRVQPGECYHLYPKSVYDAFAEYQLPELLRTPLQSLCL
QIKSLQLGSISEFLSRALQPPEPLSVQNAIEYLKIIGALDDNENLTVLGRKLSVLPVEPK
LGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSSRDNSDHLALLR
AFDGWKAAERQQSGHEYCWRNFLSSQTLRAIDSLRKQFYHLLRDGGLVDNMEKCNTWSHD
EHLIRAIICSGLYPGICSVVNKEKSVSLKTMEDGPVLLYSNSVNSQEPTIPYPWLVFNEK
VKVNSVFLRDSTAVSDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPGLAGTYLALKRE
LNELIHMKLLNPKKDIGNDNGLLEALKLLVSGDRCEGRFVYGRKLPPASKSSGKEADKKR
ASTSGSVAEHDNSKNHLQTLLLRAGHQPPTYKTSQLKNNKFRSTVFFNGLDFVGQPCGGK
KLAEKSAASEALQWLTGETQSSQRAIDHISTILKKSKTRNRAHTTRGS
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgccttgctctgcaatttttgttcacaattacctcagattatctctgaacccactcaga
actagttcatttcagctccgccgtcgccttactttaagccctagactcgtccgccctctt
cctccgttgtcgagtcctgcgttagtcttaacctgctcgtcttcttcccatgtctcttct
tccaatctcgtcattaagaaaacgggaaatagagattcctactcatcaccttacttttac
cagcaaagtttgccctacagtcgctacgcatacgacgaatatgcttccgaggaggagtct
gaccgtgaacatttgcagtcatctcccagtttgggggcttcaacacttgataacattgaa
gagtggaagtggaagctaactacactaatccgcaacaaaaatgagcaagagctagtttct
cgagagagaaaagacagaagagactttgagcaaatctctgcattggccactcgaatgggc
ttacatagccgccaatatgcaaaagtagttgtctttagtaaagttcccttgccaaattac
agatcagatctggatgataaacgcccacaaagagaggtcgttctttctccagaattacac
agccgggttgattatcatctcaaatcatacctctcacaaaagtctgttctgggagatggt
tatccaaacaatgtcttaccaacatcaagcacctcctcgagtcttgttattgaggaagga
cttcatgagcaaaatgagcctctgagacgaagtcccgttgcagagggaattctccgacgg
aagagtttgcagctgcgcaatatccaacaagattggaaggaatctgctgaaggccaaaaa
atgcaagaattacggagaagtctacctgcatataaagagaaagaagcactgttaaatgct
atttccagaaaccaggtaattgttgtgtctggtgaaacgggttgtggtaagaccacacaa
ctgcctcagtacatcttagagtctgagatcgacgctgctcgtggagctctttgcagcatt
atctgtacccagcccagacgaatatcggccatgtccgttgctgagagggttgcagcagaa
cgaggggagaagcttggagattctgttgggtataaagttcggcttgagggaataaaagga
agggatactcgtctgctgttttgcaccactggcatattgctaaggagattactactcgac
aggagcttgcgaggtgtgactcatgttattgttgatgagatccatgaacgagggatgaat
gaagattttcttcttattgtcctgaaggagctccttcctcgccggccagaactgaagtta
attttgatgagcgcaaccctaaatgctgagcttttctcctcctactttgctggggctcca
atgatccatattcctgggttcacttatcctgtccgaagctattttctagagaatatatta
gaaatgactggatacaggttgtcaacatataatcaaattgataactatggccaagagaaa
agttggaaaatgcagaaacaaaccgtccgtaaaaggaagagccaaattgcttcggctgca
gaggacgcacttgaagcagctgatttaagagattttaacccacggactagggattcccta
tcatgctggaacgctgattcaattggcttcaatcttattgagaatgttctttgtcatata
tgtagaaaagaaaggcccggtgctgttttggtgtttatgactggttgggatgacataaat
tctctcaaggatcaactccaatctcatccactgctgggagatccaaccaaggttttactg
cttgcatgccacggttctatggatagctcagaacagaaattgatattcaatagacctgaa
gatggcatcaggaaaatagttttagccaccaacatggccgagacaagcatcaccatcaac
gatgtagttttcgtggtcgactgtggaaaagctaaggagacgtcctatgatgcactgaac
aacactccatgtttgcttccggcctggatctcaaaggcttctgctcggcaaaggagggga
agagctggccgtgtacagccaggcgaatgctaccacttgtatcccaaatctgtatatgat
gcttttgctgaatatcaacttccagaactgttgaggacacccttacaatctttatgcctc
caaattaaaagcctgcaacttggtagtatttcagagttcttatcaagggccctgcagccg
ccagaaccattatctgttcaaaatgctattgaatacttgaaaataattggcgccctagat
gacaatgaaaaccttacagtgttaggtcgcaaattgtcagtgcttccggttgagcctaaa
cttggtaagatgttgatattgggggcaattttcaactgcctcgatccaataatgactatt
gttgctggtttaagtgtcagagatccatttttgatgccgttcgacaagaaggatcttgcc
gagtctgcaaaagcccagttttcctcgcgtgataacagtgaccaccttgctcttctccgt
gcttttgatggttggaaagctgctgaaagacagcagtcaggtcatgagtactgttggaga
aatttcctttcttcacaaactctgagggctattgattctcttaggaagcagttctatcat
ttgcttagggacggtggattggttgataatatggagaaatgcaacacatggagccatgat
gaacatctcatccgggccattatttgctcagggctgtacccaggaatttgctctgttgtg
aacaaagagaaatcagtatcactgaaaacaatggaggatggtcctgtattgctttactcg
aattcagttaattctcaagaaccgaccatcccatacccatggctggtattcaatgagaag
gtgaaggtgaattctgtatttcttcgagattcaacagctgtgtcggattctgtgcttctc
ttatttggaggaaatgtttccagagggggtctggatgggcacttgaaaatgttgggtggt
tacttagaattcttcatgaagcctggcttggctggcacttatcttgccttgaagagagag
ctcaatgaactcatccatatgaagcttttgaatcccaaaaaggacataggcaacgacaac
ggactcctggaggctttaaaactgctagtatcaggagatcgatgtgagggtagattcgtc
tatggtcgtaagctgccaccagcttcaaagagttctggaaaagaggcagataaaaagcgt
gcatccacgagtggcagtgtagccgaacacgacaattccaagaatcacttgcaaacattg
cttcttagagcaggtcatcaaccgcccacctacaaaacatcacagttgaaaaacaataag
ttccgatccactgtcttcttcaatggtttggatttcgttggtcagccatgtggcggtaaa
aaacttgcggaaaaaagtgctgcctctgaggctcttcagtggttaaccggcgagacccaa
tcatctcaaagggccatcgaccatatctcaaccatactcaagaaaagcaaaacaaggaat
cgagctcacaccacaagggggagttaa
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integrated database retrieval system
