Cynara cardunculus var. scolymus (artichoke): 112524193
Help
Entry
112524193 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112524193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524193
03012 Translation factors [BR:
ccav03012
]
112524193
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112524193
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112524193
Translation factors [BR:
ccav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112524193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
AAA_11
T2SSE
AAA_23
PhoH
Dicer_dimer
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112524193
NCBI-ProteinID:
XP_024989682
LinkDB
All DBs
Position
LG 13:complement(4942533..4959628)
Genome browser
AA seq
1199 aa
AA seq
DB search
MQLLFLQYATTFHFSCPKALDKTSLSPPSTAMKDIPRTSSYGSVYVPPHHRLRSVITSSA
SSPDISSTSRAVVANNSFVKSSHTNNNSLGTSYPYLPPNQQHQKSQVHDVSEEVTYRGLD
PSIPTGASTSDMDSWKWRLTTLVHSKDEQELVSREKKDRRDYDQIAALATRMGLHSHLYA
KVLVVSKLPLPNYRFDLDDKRPQREQVSVSQGLQRRVDAHLREYLSHKARSMKGSQDNLF
WRTSSSGSIATDEGLFEQPEVLPQSKAAMEKVLWRRSMQLQTEQRAWQESSEGFKMLEFR
RSLPAYKEKDAILNAISQNQVVIISGETGCGKTTQIPQFILESEINSGRGATCSIICTQP
RRISAMSVSERIASERGEKLGETVGYRVRLEGIKGRDTRLLFCTTGILLRKLLVDRNLKG
VTHVLVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLDAELFSSYFGGVPLVQIP
GFTHPVHTYFLEDVLEKTGYRLTAENQIDDYGQDRTWKSNKQVIRKRKSQIASAVEEALG
SADFKEFSQQTQESMSCWNPDCIGFNLIEFLLCSMCENENPGAILVFMTGWDDISSLKDK
LQAHPLLGDPSRVLLLACHGSMGSSEQRLIFERPEAGVRKIVLATNMAETSITIDDVVFV
IDCGKAKETSYDALNNTPCLLPSWISKGSAKQRRGRAGRVQPGECYHLYPRCVYDAFADY
QLAEILRTPLQSLCLQIKSLKLGSISEFLSKALQSPELLAVQNAIEYLKIIGALDESENL
TVLGRYLTMLPVEPKLGKMLILGAILYCLDPILTVVAGLSVRDPFLAPLDKKDLAEAAKA
QFSCDYSDHLALVRAYEGWKVAEYGLTGYEYCWKNFLSAQSMKAIDSLRREFQSLLKDTG
LIDSNTPIYNTWSYDENLLRAVICYGLYPGICSVVHNEKSFSLKTMEDGQVLLHSNSVNA
RDSKIPYPWLVFNEKIKVNSIFLRDSTAVSDSVLLLFGGSILRGDIDGHLKMLGGYLEFF
MEPALAEMYQSLRRELDELFQCKLMNPRMDLHTHHDLLSAVRLLLPGDQCNGRFVFNHQV
LYSNSKPYIASVPPPPPLVSRVESGPGGDNSKSQLQTLLSRAGYAAPIYRTNQLSNNQFR
SICEFNGMQIMGHPCHNKKQAEKDAAAEALEQLMGGKNAARDSIDNLSMMLKKSKKNHN
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcctttttctgcaatacgccaccactttccacttttcgtgccctaaagccctt
gataaaacctcattatccccaccgagtacggcgatgaaggatataccgcgtacgtcttcg
tacggctccgtgtatgtgcctccccaccaccgccttcgctccgtcatcacttcctctgcc
tcttcccctgatatctcctctacttcccgtgctgttgttgccaacaattcttttgttaag
tcatctcacactaataataatagtttagggacttcttatccttacttgcctcccaaccaa
caacaccaaaaatcacaggtccatgacgtctcggaagaagttacctaccgcggattagac
ccttctattcccaccggtgcttccacatctgatatggattcttggaagtggaggctaaca
acactagtgcacagcaaggatgaacaagagctggtttcaagggaaaaaaaggacagacgt
gattatgaccaaatagcagccctggcaactagaatgggtttgcatagccatttgtatgcc
aaagtgcttgtggttagcaagcttcctttgccaaactatcgatttgatctggacgataaa
cgcccacagagggagcaggtgtccgtatctcaggggttgcaaaggagagttgatgctcat
ctcagggaatacctttctcacaaggccaggagtatgaagggttctcaagataatttgttt
tggaggacaagtagcagcgggagcattgctactgatgaaggactctttgagcaaccagag
gtgcttccacagagcaaagctgcaatggagaaagtcctttggcgaaggagcatgcaactg
cagactgagcaacgagcttggcaggaatcttcagaaggtttcaagatgctagagtttcgt
agaagtctccctgcttacaaagagaaagatgcaatattgaatgcaatttcacagaatcag
gttgttatcatctcaggtgaaactggttgtgggaagacaacgcagattccccagttcatt
ttagaatcagagattaattctggtcgtggggccacatgtagtatcatatgtactcagcct
cgacgtatatctgcgatgtctgtttccgaaagaattgccagtgaaagaggagagaagttg
ggtgaaactgttggatatagagttcggttagagggtataaaaggaagagatacccgcctg
ctattctgcaccacaggaattttgttgagaaaattactagttgatagaaacttgaagggt
gtgactcatgttcttgtagatgagattcatgagcgtggcatgaatgaagattttctgctc
attgttctgaaagaactacttcctcgtcggccagaactgaggcttattttgatgagtgca
accctggatgcagagctcttttcttcctactttggtggtgttccattggtccagattccg
ggtttcacgcacccagttcatacctattttcttgaagatgttctggaaaaaaccggatac
agattaacagcagaaaatcaaattgatgattatggtcaggatagaacatggaaatctaat
aaacaagttataagaaagaggaaaagccaaattgcctcagctgttgaggaggcacttgga
tcggctgattttaaggaattcagccaacagacacaggaatctatgtcttgttggaatccc
gactgcataggtttcaacctcatagaattcttactatgcagtatgtgtgagaatgaaaat
cctggtgctattttagtatttatgaccgggtgggatgacataagttctctgaaggacaag
ctacaagcacatcctctactgggggatccaagtcgagttttgttgcttgcatgccatggt
tctatgggcagctcggagcagaggttaatattcgaaaggccagaagctggggtgaggaaa
atagttttggctacaaatatggcagaaaccagtatcacaatagatgatgtggtttttgtt
atcgactgtggaaaggccaaagagacatcgtatgatgctctaaacaataccccttgcctg
cttccttcatggatatctaagggttctgctaaacaaaggcgaggacgagccggtcgtgtt
caaccaggagagtgttaccatctatatcctagatgtgtctatgatgcttttgcagattat
caattggcagaaatactgaggacgcctctgcaatcactgtgtctccaaattaaaagttta
aaattaggaagtatttctgaattcttatctaaggctttacagtcacctgagttattagcg
gttcaaaatgccatcgagtatctcaagattattggtgctttagatgagagtgaaaatctg
actgtattgggtcgttatttgacaatgcttccggtggagcccaaacttggaaagatgctt
atactgggtgcgattctttattgcctggaccctatactgacagttgttgctggtcttagt
gtcagagatccttttttggcacctctagacaagaaggatttggcagaggcagcgaaagca
caattttcctgtgattacagtgaccatcttgctcttgtcagggcgtatgagggttggaaa
gtagctgaatatggtcttactggttacgaatactgttggaaaaattttctctccgcacag
tcaatgaaagctattgattctctccgtagggaatttcaatcgttgctcaaggataccggt
cttatcgacagcaacacacccatttacaacacttggagctatgatgagaatctccttcgg
gcagttatctgctacggattgtatccaggaatttgctctgtcgtgcacaacgagaagtca
ttctcactgaaaacaatggaggatggtcaggtgcttctacactctaactcggttaatgca
cgtgattctaaaattccatacccatggctggtcttcaatgaaaagatcaaagtgaactcc
atttttcttcgagattcaacagctgtgtctgattcagtgctgctcctctttggtggaagc
attttgagaggcgatattgatggccacttgaaaatgttaggaggatacctggagttcttt
atggagcctgcattagcagaaatgtatcaaagcttaagacgtgagcttgatgaattattt
cagtgtaaactgatgaatcccagaatggacttgcacacccaccatgatcttttatctgcc
gtgcgcttgctgctccctggagatcaatgtaacggcagatttgtattcaaccatcaggtg
ctatatagtaattcaaaaccttatattgcatcagtgccaccaccaccaccactagtttcc
cgggtagaaagtggaccaggcggggataactccaagagtcaactccaaacattacttagc
agggctggttatgccgccccaatctacaggaccaaccaattgtcaaacaaccagtttaga
tcgatttgtgaattcaatggcatgcagattatgggccatccttgtcacaacaagaaacaa
gcagaaaaggatgctgctgcagaggctttagagcagctcatgggcggcaaaaatgcagcc
cgtgattcaattgataacttgtcgatgatgctgaagaaaagcaagaagaatcacaactaa
DBGET
integrated database retrieval system
