Cynara cardunculus var. scolymus (artichoke): 112524205
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Entry
112524205 CDS
T05604
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112524205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524205
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112524205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
112524205
NCBI-ProteinID:
XP_024989705
LinkDB
All DBs
Position
LG 13:4901231..4911998
Genome browser
AA seq
2096 aa
AA seq
DB search
MTLFLSDEEYARCSHDPSLIAQKADAYIRELYNQLETEKAQYDASSITAEQTCSLLEQKY
VSLKSEFSALQSQYSQLNSTLEERGSELAQIQADKHQVYLQSIGKDGEIERLSLEASELH
KSKSQLLQLIEHKDLEINEKNATIKGYLDKIVALTDSASFKESRSSELEAELARVHTSLA
RLSQEKELVERHNIWLNDELTTKVNSLLELRKVHNELEADMSSKLADLERKYNDTSSSLK
WKDDRVKELESKLEALQKEFCSSKDMAAATEERLSAELSTVNKLVELYKESSDEWSKKSG
ELEGVIKALETHASQVEKDYKDRLEKETSSRMEFEKEVLHLKEKLEKCEAELENCRNSDQ
LNLLQMSSFNTKAYGGATDANDVDGNNLMLVPSIPAGISGTALAASLLRDGWSLVKMYEK
YQEAVDALRHEQLGRKQSQSILERVLHEIEDKAEVILDERAEHDRMVEAYDMLNEKLQHS
ISEQTALERTIQELKAELRRHKRDYTLAQTENRDLQRQITILLKECRDIQLRCGSADYDS
AIEGMSSLADQSNVSSDADTVFSERLLTFKDINGLVEQNVQLRGLVRLLTEQIETKEVEL
KENFEKEFQKHSNETASKVDAVLARAEEQAHMIESLHTAVAMYKKLYEEEHRRHVSQLQS
PDTAPADRRDDVMLLLEGSNDASKKAQEQAYERIKLLEEEMTGLRGEIITLRSQRDRSTL
EATFAHEKLERFMKDFEHQREESNGIRARNVEFSQLIVDYQRKVREASEALHTAEDLSRK
LNMEVSVVKREKEMLVNSEKRAFEEVRSLSERVHQLQATLNTFQSAEEVREEARSAQRIN
QEDHVKRTEREWAEAKKELQEERDNVRKLTHEHNTAMRGAMQRIEEMGKELASALRAVAD
ANARASAAEERCSQLEKMKKIDFEINDELVPTSSTRDDMAVLHTAKEEVEKLRVEVQVNK
DHMLQYKSIAQVNETALKQMEASHENFKAEAEKVKKSLEDELVSLKEQVNQLQDGYNLKA
KELASASVSQEEALAFSLSEVSSLREECTSKMLRIEALESQMSALKDDLEKEHLRWRTAQ
DNYERQVILQSETIQELTKTSQALASLQEEASELRRVSDLLRIENEELKSKWETEKLVLE
EAKDKAEKKYHEINEQNKILHDQLEALHIKVAEKSHGSGAESSGSVDKFNDAGLQNVVKY
LRRSKEIAETEISLLKQEKLRLQSQLEGALKAEATAQGSLRAERENSRSVHFTEEEFKAL
QLQVREMNLLRESNVQLREENRHNFEECQKLRQSTHNTRMEVVNLENLLGERQNEVEACK
REIEMQKKDRKDLEKRVDELLDKFRDIDPEDYGRMRADFQQMQVKLLDKDGQLEEVKKLV
LEKQEVILRLEQDLARSKVEIDERESKISSISQTETSLKSDMDRQKRFFIQLKRRCDNLV
KEKEELNKKNQELSKELADSNQVKRNSVDTAGEQATREKEEKDTRIQMLERTVEKLRDES
REREEKDTRIQMLEKVVERLRDEVRKGKDEVRIEKSKNQKNEKGIAESHEKLKLADDLEK
HKQALKTLSDEVEKLKHATESEGASTAQPHSGDSFDDLAAACLLAVENFEHVANQVCSEF
GVPTTGDTLSVELGGSARATIGEVVPTAVASGTLASVVPAAQNMEESSKTPVTSKPKLEQ
RKVARRLVRPRIVKSDQPKGDVDMIETVGANMQSSVRKRPSALSVSEGQEGSHVRESSAA
DVAAPLIKKSRGSEEPQEGAEVQSVAMASDAPESFPSIAEEALGNGGDEVQLKEETADAG
RDEDVETGEEQAVEDQGELQNDRSDIGEENMNRTAEIEVSEFQPKISEAEHAQKQQATGE
AGSDPEEGEMVSDAIIGHEGGGASTSNNTSSAMIISNQEMGEAQLVEHQMRSPSPLPVED
EVADDALGDLEVSSPLLEDNEDKNEEGEIEVEETTPESSTDKLNNDGNDEGGSMAEEAAI
DHVPTTAAAVLVPPVAEKTSNTSAMSEAGVANQDGSTLSSVSTSGPTEVKPEESVADTSS
TTINLNERARLRSLQRLAGTLPSSPPVARGRGRTPRGRGRGGRTARGGQTPGSQGM
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatttctgtccgacgaagagtacgctcgctgctcccacgatccatctttgatt
gcgcagaaagccgacgcttacattagagaactttacaatcaactcgagactgaaaaagct
caatacgatgcttcatccatcaccgctgaacagacctgctcgcttctcgaacagaagtat
gtttctctcaaatctgaattctctgcacttcaatctcaatactcgcaactgaattccacc
cttgaggaacgtggctctgagcttgctcagattcaagcggataagcatcaagtttatctc
caatcgatcggcaaggatggggagattgaacggctatccttggaggcttcagagcttcat
aagtccaaaagtcagttgctgcaactgattgaacataaggatttagagattaatgagaag
aatgctaccatcaagggttatcttgacaagattgttgccttgaccgacagtgcttctttt
aaagaatcacggagtagtgaattggaggctgagcttgcacgtgttcacacttccttggct
cgtttgtctcaggagaaggaattagttgagaggcataatatttggcttaatgacgagttg
actactaaagtgaacagtcttttggagctgaggaaggtacataatgaactagaggcagat
atgtcttctaagcttgcagatcttgagagaaaatacaatgacacatctagctcattgaag
tggaaggatgacagagtaaaggagctggagtcaaagctagaagccttacagaaggagttt
tgttcatctaaggatatggctgctgctactgaggaacgcttgtcagctgaactttcaact
gtaaacaagctggttgaactgtacaaggagagttcagatgagtggtccaagaagtcaggc
gagcttgagggtgttattaaggctttggagactcatgcaagtcaagttgagaaggattac
aaagatagacttgagaaggaaacatcctctagaatggagtttgaaaaggaggttttgcat
ttaaaagaaaaacttgaaaagtgtgaagcagaattggaaaattgcagaaattctgatcag
cttaatcttctgcagatgagcagtttcaacacgaaagcatatggaggcgctaccgatgcc
aatgatgtggatggaaataatctaatgcttgttcccagtattccagcaggtatttcaggc
acagcactagctgcttctcttcttcgagatggttggagtctagttaaaatgtatgagaag
taccaagaagctgttgatgctctgaggcatgaacaattgggaagaaagcagtcccaatca
atactggaacgggtgttgcatgaaatagaagataaagctgaggtcatattggatgagcga
gcagagcatgatagaatggttgaagcatatgatatgttaaatgaaaaattgcaacattct
atttctgaacaaactgcacttgagagaactatccaggagctgaaggctgaattaagaagg
cataaacgggactacactttagctcaaacggagaaccgtgaccttcagagacagataaca
attctgctaaaggaatgtcgtgacatacaactccgttgtggatctgcagattatgattct
gctatcgagggaatgagttccttggctgatcagtcgaatgtcagttctgatgccgacact
gttttctctgaacggttgttgaccttcaaggatataaatggattggttgagcagaatgta
cagcttcggggtctagttcgtcttctcactgagcagattgagactaaagaagtcgagttg
aaggagaacttcgagaaggagtttcaaaagcattctaatgaaactgcttctaaagtcgat
gcagtattggctagagcagaagaacaagcacacatgattgaatcacttcataccgctgtt
gctatgtacaagaaactatatgaagaggagcatagacgtcatgtttctcaactgcaatct
ccagatacggcaccagcagacagaagggatgatgttatgcttctacttgaaggttctaat
gatgcttcaaaaaaggcacaagagcaagcttacgagcgcataaagcttcttgaagaagag
atgacagggttaagaggggagatcattacattaagatcacagcgtgacagatcaactcta
gaagcaacttttgcacatgagaaactggaaaggtttatgaaagattttgagcatcaacgg
gaggaatcaaatggcattagagcaagaaatgtcgagttctcacagttgatagttgattac
caaagaaaggtgcgtgaagcttctgaggccttgcatactgctgaggacttatcgcggaag
ttaaatatggaggtatctgttgtaaagcgtgaaaaagaaatgttggtaaattctgaaaag
agagcgtttgaggaagtccgtagtttatcagagagagttcatcagttgcaggctaccttg
aacacatttcagagcgctgaagaagtgcgggaggaagccagaagtgctcaacggataaac
caggaggatcatgtcaaacgtaccgaaagagaatgggcagaggctaaaaaggagcttcaa
gaagagcgtgacaatgttcgcaagctcacgcatgagcataatacagctatgagaggagct
atgcaacggatcgaggagatggggaaagaactagctagtgcgttgcgtgctgttgctgat
gctaatgctagggcttctgctgctgaagaacggtgttctcagttggagaaaatgaaaaaa
atagattttgagataaatgatgaacttgtacccacctcttcaaccagagatgacatggct
gtgttgcatactgcaaaggaagaggttgagaaattgagagtagaagtgcaagtaaacaaa
gaccacatgttacaatataaaagcattgcgcaggtgaatgaaactgcgctaaaacagatg
gaagcttcccatgaaaattttaaagctgaggcagaaaaggtgaagaaatcattagaagat
gaacttgtatcactgaaggagcaggttaatcaacttcaagatggctataatttgaaggct
aaagagttggcttctgcatctgtatcacaagaagaagctcttgctttctcattgtcagag
gtttctagtttgagggaagaatgtacttcaaaaatgttgcgcattgaggctttagagtca
caaatgtcagccctgaaagatgatttggagaaagagcatctaagatggcgtactgctcaa
gataattatgagaggcaggtcatactgcagtctgagacaattcaggagttgactaaaaca
tcgcaagcattggcttcactacaggaagaagcatctgagctccggagggtatctgacttg
ctcagaattgagaatgaagagctaaagagcaagtgggaaacagagaagttggtgctagag
gaggccaaagataaagcagagaagaaatatcatgagatcaatgaacagaacaagatcttg
catgatcagctcgaggcattgcacattaaggtggcagaaaagagtcatggttccggtgca
gagtcttctggaagtgttgataagttcaatgatgccggactacagaatgtggtgaagtat
ctgagacgttcgaaagagatcgcagagactgagatatctttgctgaagcaggaaaagctt
cggttgcagtcacagcttgagggtgctttgaaggctgaagcgacagcacaaggatcgctt
cgtgcagagcgagaaaattcaagatcagtacattttacagaggaggagtttaaagcgcta
cagcttcaagttagagaaatgaatttgcttcgtgaaagcaatgtacagcttagagaagaa
aacagacacaattttgaggaatgtcaaaaactgcgccaatcgacccataatactaggatg
gaagttgtgaatttagagaatttgcttggtgaacgacaaaatgaagtcgaagcttgtaaa
agagagatagagatgcagaagaaagaccgaaaagacctagaaaagagagttgatgagctg
cttgacaaattcagagatattgatcctgaagattatggtcggatgcgagctgattttcag
caaatgcaggtaaaactgttggataaagatggacagttggaggaggttaagaaacttgtt
ttggagaaacaagaagtaatactgcggttggagcaggatcttgcaagaagcaaagtggaa
atagatgaaagagagtcaaagataagtagtatttcgcaaactgagacatcgctgaaatca
gatatggacaggcagaagaggttctttattcaattgaaacgtagatgtgataacttggtg
aaggagaaggaggaactgaataagaagaatcaagaactctcaaaagagttggctgattct
aaccaggtcaaaaggaacagtgtggacactgcgggtgagcaagccactagggagaaagaa
gagaaagatacaaggatacagatgcttgagagaactgttgagaagctgagagatgagtca
agggagagagaagagaaagatacaaggatacagatgctggagaaagttgtagagaggcta
agagatgaggtgaggaagggaaaagatgaagtcaggattgagaagtcaaagaatcaaaag
aatgagaagggaatagctgaatctcatgaaaagttaaagctggcagatgatttggagaaa
cacaaacaggcactgaaaaccctgtctgatgaagttgaaaagctgaagcatgccactgaa
tcggagggtgcttcaactgctcagccccattctggtgactcctttgatgaccttgctgct
gcatgtctccttgctgtagaaaattttgaacatgttgcaaatcaagtatgtagcgagttt
ggagttcctactactggtgatacgctgtcggttgagttgggtggatcagcacgagccacc
attggtgaggttgttcctactgcagtggcttctggtactttggcgtcagttgtccctgca
gctcagaacatggaagaaagttcaaagacaccagttacgtccaaaccaaaacttgaacag
cgtaaagttgcacggaggttggtccgaccacgaattgtaaagtctgaccaaccaaagggt
gatgttgatatgatagaaactgttggagctaatatgcagtcatctgtgcgcaaacgtccg
tctgctttatctgtttcagagggacaagaaggatcgcatgtgcgtgaaagtagcgctgct
gatgttgcagcacctctaattaagaaatccagaggttcagaagaaccacaggagggtgcc
gaggttcaaagcgtcgcgatggcttcagatgctcctgaaagttttccttccatcgctgaa
gaggctctaggcaatggtggagatgaagttcaattaaaggaggaaactgctgatgctgga
agggatgaggatgttgaaactggtgaggagcaggcagttgaggatcaaggagagttgcag
aatgatagaagcgatattggtgaagagaatatgaacaggacagctgaaattgaggtttct
gagtttcagccaaagattagtgaagctgagcatgcacaaaagcagcaggcgacaggtgaa
gctggaagtgatcctgaagagggcgaaatggtttctgatgctattattggtcatgaaggt
ggtggtgcaagtactagtaataacacatctagtgccatgataataagcaaccaagaaatg
ggggaagctcagttagttgagcatcagatgaggtcaccttcacctttgccagttgaagat
gaagtggcagatgatgccttaggagatttggaggtcagttctccactactggaggacaac
gaagacaagaatgaagaaggtgagatagaagtagaagagactactcccgagagttcaaca
gataagctaaataacgatggcaatgatgaaggagggtctatggctgaagaggctgctatt
gatcatgttcccaccactgctgctgctgttttagtccctcctgtagctgagaaaacatcg
aacacttctgctatgtctgaagccggtgttgcaaatcaagacggtagcactctcagtagt
gtttccacatcagggccaacagaagtaaagccagaggagtcagttgctgatacaagttca
acaaccattaatttgaacgagagagcaaggctaagatctttgcagagactggctggaaca
cttccttcatcacctcctgtagcaaggggtcgtggcaggacaccaaggggacgaggtcgt
ggtgggcgcactgcacgtggtggacaaacacctggttctcaaggaatgtga
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integrated database retrieval system
