Cynara cardunculus var. scolymus (artichoke): 112524285
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Entry
112524285 CDS
T05604
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112524285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112524285
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112524285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
112524285
NCBI-ProteinID:
XP_024989816
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All DBs
Position
LG 13:complement(13190930..13198628)
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AA seq
1265 aa
AA seq
DB search
MKRKYYNLHQSTHQFNPQPFEAYWCGSWIPVERLRIRNGVVSMFIINKGDTTEETIPMSD
LRITSRKATLMDCTCFLRPGIDVCVHAPYQAAEEESNDKNLNPVWIDAKITSLERKPHEE
DKCACEFYVSIYLKQGPAGMIKKAVNKETKLVHIDQISILQKLEGKPSENNQYRWNLSED
CASRRIFKLFTGKFSSDISWLIVASVFKQLVFDVRSVDNQIVYQIWDGDGEKSLPDSENH
SSAINFRLENGISIPFLVPFSQTESQEEKTPNCGADEIASTTNYDLMGLRRSKRRNIQPE
RYMGDDDVSESEVDLSRVGLYRPNRSKFEEVPIVLSIQDDHSFKDENKLDYFRKIYKEEG
YLGRQNDTSKSKEVRTEVPYIQDRGEQRYPPSTASQGHSSRPYIYADSYKAEISDDEGGE
ISDIWAKYFKMHGSSKIHKRKYKAPQSDFDGGWKGLPVTNKRGRKKRGSSGKESIYDART
SFRKSVCASVYRELMSRCMRNIDASINIEQPAVIDQWNKFQIGKSLEERENNEVPVKEEE
DEDEEMTEEKELEMLWKEMELALATTYLMEESEGSHDLMQKSNTQEQKCRHDYRLNEQFG
IICRLCGHVRSEIKDVSPAFLPGVVWTPSKETRAEDDAEQNKENVDTRLEIVCRPASSNM
VVDGKENVWALIPNLRDKLRFHQKRAFEFLWRNLAGDIVPSEMEAASKRRGGCVISHTPG
AGKTLLIISFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWEIPIPVYQIHGGQTYREQ
VLRNKLKLAPGLPRNQDVMHVLDCLEKIQKWLTSPSVLLMGYTSFLTLTREDSNYAHRQY
MAKVLRQCPGILILDEGHNPRSTKSRLRKALMKVDTPLRVLLSGTLFQNNFGEYFNTLTL
ARPRFVTEVLKKLDPKFQRRKKGVLSKFSLENRARKLFVIKIAEQINSNVPKDRQQGLSI
LRSLTSRFIDNYEGGSAENLPGLQCYTLMMKSTTIQQDILLKLQDQRPVYKGFPLELELL
ITLGSIHPWLIQTTACASQYFKEEELKALDRLKFDLKLGSKVRFVMSLVPRCLLRKEKVL
IFCHNIAPINLFLETFDRFYGWKKGEEVLVLQGELELFERGRVMDKFEEPGGPSKVMLAS
INACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQDKVVYVYQLLATGTLEEEKH
SRTTWKEWVSSMIFSEELVEDPSHWQAPKIEDELLREIVEEDRASLFHAIMKNEKASNMV
VRGRE
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggaagtattataacttacaccaaagcacacatcaattcaatccacaacctttt
gaagcatactggtgtggttcatggatacctgtggagcgcttaagaatcagaaatggagtt
gttagcatgtttatcataaataaaggggatacaactgaagaaaccattcccatgtcagac
cttcgaataacctcaagaaaagcaactttaatggattgcacgtgcttcctgagacctggg
atagatgtttgtgtgcatgctccttatcaagcagcagaagaagaatcaaacgacaagaat
ctaaatcctgtctggattgatgctaagataacctcactagagaggaagcctcacgaagaa
gataaatgtgcctgtgagttctatgtcagcatctatctgaagcaaggtcctgctggcatg
atcaagaaagctgttaataaagagaccaaactggtacacattgatcagatctcaattctt
cagaagcttgaagggaagcctagtgaaaataaccaatatcgctggaacctttctgaagac
tgcgcttcacgtcgtatatttaaactatttaccggaaagttctcctcggatatctcatgg
ttaattgttgcatctgtcttcaagcaacttgttttcgatgtgaggtcagttgacaaccag
attgtgtatcaaatttgggatggtgatggtgaaaagagtttgccagattctgaaaaccat
tcaagtgctattaacttcagattagaaaatggtatttccattcctttccttgtcccattc
agtcaaacagaatcccaagaggaaaagacacctaattgtggtgctgatgaaattgcttca
acaaccaactacgatctcatgggcttgcgtcggtcaaagcgtagaaatatccaacctgag
cgctatatgggtgatgatgatgtgtccgagtcagaagttgatttatctcgtgttggatta
tacagaccaaacagatccaaattcgaggaagtcccaatcgtgttatcaatccaagatgat
cattctttcaaagatgaaaataaattggattacttcaggaaaatatacaaagaagagggt
tatcttggaaggcagaatgatacaagcaagtcaaaggaggtgagaacagaagtcccctac
atacaagatcgaggtgaacaacgataccctccttctacggcttctcaaggtcattcttca
aggccgtatatatatgctgattcttataaggctgaaatttctgacgatgaaggaggggaa
attagtgacatatgggccaagtattttaaaatgcatggttcttccaaaatccataaaaga
aaatataaagctccccaatctgactttgatggtggatggaagggattacctgtaacaaat
aaacgaggccgtaaaaagcggggttcttctgggaaggagagtatttatgatgcaaggact
tcttttagaaaatctgtttgtgcaagtgtttatagagaattgatgagcagatgcatgagg
aatatagatgcatcaatcaacatagaacagccagctgtgattgatcaatggaacaagttt
caaattgggaaatcattggaggaaagggagaataatgaggtacctgtaaaagaagaagaa
gacgaagacgaagagatgacagaagaaaaagaacttgaaatgttgtggaaggagatggaa
ttagcactggccaccacatatcttatggaggaatcagagggttcccatgatttaatgcaa
aaatctaacacccaggagcagaagtgtagacatgattacagactcaacgaacaatttgga
atcatctgccgattatgtggtcatgtgaggtctgaaataaaagacgtctcaccggccttt
ttgcccggcgtcgtgtggacgcctagcaaagaaacccgtgcagaagatgatgcagagcag
aataaggaaaatgtagacacacgccttgaaatcgtatgccgtcctgcttcatccaacatg
gttgtagatgggaaagaaaacgtgtgggctctaatacccaatcttagagacaagctacga
tttcatcagaaacgagcattcgagtttctatggcgaaatcttgctggcgatatagtaccc
tcagaaatggaagcagccagtaagagaagaggtggctgtgtgatctcccacactccagga
gccgggaaaacattactcataatctcatttctcgtcagctacttgaaactgtttcctgga
tcccgaccattagtccttgctccaaaaacaactctgtacacctggtacaaagaaatcatc
aaatgggagatcccaattccggtgtaccaaatccacggtggtcagacatacagagaacaa
gttctaagaaacaaactgaaactagctcccggtcttcctcgcaaccaagatgtgatgcat
gttttagactgtctagagaaaattcagaaatggctcacaagtccaagtgtcctcctcatg
ggttacacttcctttctaacactcacccgtgaagattcgaactacgctcaccggcaatac
atggccaaagtccttcgccagtgccccggaatcctgatcctcgatgaaggccataacccg
agaagtaccaaatcgagactaaggaaagccttgatgaaagtagacaccccattaagagta
cttctatccggcaccctttttcagaacaatttcggtgaatatttcaacactctcacctta
gccagaccgcgattcgtcaccgaggtactcaagaaactcgatcctaaattccagaggaga
aagaaaggagttctttccaagttttcgctcgaaaacagggcaagaaagctgtttgttatc
aaaatagcagagcaaatcaactcaaatgttccaaaggatagacaacaggggttgagcatt
ctaagaagtttaactagcaggtttatcgacaactacgaaggtgggagtgctgaaaacctt
cctgggttgcaatgttacactctgatgatgaaatcaaccaccattcagcaagacatcctg
ctaaaacttcaagatcaaagacccgtttacaaaggttttcctctggaactcgaacttttg
atcacgctgggctcaatacatccgtggttgatacaaactaccgcatgtgcaagccagtat
ttcaaagaggaggaactaaaagcacttgatagactcaagttcgacctcaaactcgggtcg
aaagtcagattcgttatgagcttagtccctcgttgtctactcagaaaagaaaaagtcctc
atcttttgccacaacatcgctccaatcaatctgttcttggaaacattcgatcggttctac
ggatggaaaaaaggtgaagaagtactcgtccttcaaggagaactcgaactcttcgaaaga
ggacgagtgatggataaattcgaagagcccggaggaccatcaaaagtgatgttggcttcc
attaatgcttgtgctgaaggaatcagtttgacagcggcttcacgggtgatcttgttggat
tcggaatggaatccttcgaaaagcaaacaagcgatcgctcgagcttttcgcccgggtcaa
gataaggtggtctacgtgtatcaattacttgcaactgggacactggaagaagagaaacac
agtagaactacttggaaagagtgggtgtcgagtatgatatttagtgaggaattggtggaa
gatccatctcattggcaagcaccaaagattgaagatgagttgttgagggagatagtggag
gaggatcgagcttctctatttcatgccattatgaagaacgaaaaagcctccaatatggtg
gttagaggtagagagtaa
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