KEGG   Cynara cardunculus var. scolymus (artichoke): 112524412
Entry
112524412         CDS       T05604                                 
Name
(RefSeq) WD repeat-containing protein LWD1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112524412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccav04121]
    112524412
   03036 Chromosome and associated proteins [BR:ccav03036]
    112524412
Ubiquitin system [BR:ccav04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112524412
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     112524412
SSDB
Motif
Pfam: WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_Gbeta Beta-prop_Aladin Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd MIOS_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR41 Beta-prop_WDR90_POC16_2nd WD40_RFWD3
Other DBs
NCBI-GeneID: 112524412
NCBI-ProteinID: XP_024989977
LinkDB
Position
LG 1:11133037..11134394
AA seq 361 aa
MGANTDPNHDGSDEQQRRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEI
VQLDDSNGEIRSDPTLSFEHPYPPTKVIFIPDKECQKPDLLATSSDFLRIWRISEDDDGG
DDETSHNGSSSSRRVEMKSLLNNNRNSEFCGPVTSFDWNEAEPKRIGTSSIDTTCTIWDI
ERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPL
VRLGWNKQDPKYMATIIMDSAKVVVLDIRHPTLPVVELQRHQASVNAIAWAPHSSCHICT
AGDDSQALIWDLSSMGQPIEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFASKLQILR
V
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgggtgccaacaccgatcccaaccacgatggatccgacgagcaacagagacgttccgag
atctatacctatgaggcgccatggcatatctacgccatgaactggagcgtccgccgtgac
aagaagtatcgtcttgcaatcgctagccttcttgagcagtaccctaaccgtgttgaaatc
gtccaactcgatgactccaatggcgagattagatctgatcccacactctcctttgaacac
ccctatccacctaccaaggtcatcttcatccctgataaggagtgccagaagccagacctc
cttgccacttccagcgacttcctccgcatttggcgtatctccgaggacgacgatggcggc
gatgacgaaacttctcacaacggcagtagcagttcccgtcgggtcgaaatgaagagcctc
ctcaacaacaatcgcaacagcgaattttgcggtccggtcacttcttttgattggaacgag
gccgaaccgaagcgcataggcacttccagtattgataccacctgtaccatctgggacatc
gagagggagaccgtagacacgcagcttattgctcacgataaggaggtctatgacatcgca
tggggcggcgttggcgttttcgcatccgtctccgccgatggttcggtccgagtcttcgat
cttcgcgataaagagcattccaccatcatctatgagagctccgagcctgacaccccgcta
gttcgtttgggctggaacaagcaggaccctaaatacatggccaccatcataatggacagt
gccaaggtcgtcgtgctcgacattcgtcacccaacactaccggtggtggagctgcaaagg
caccaggccagtgtcaatgccatagcctgggctccacacagttcgtgccacatctgtacc
gctggtgatgattctcaggctctcatctgggatctatcttccatgggtcaacctatcgaa
ggtggattggatcccattttggcttacactgctggtgccgaaatagaacagttgcagtgg
tcatcttcgcaacctgattgggttgccattgcttttgcatccaaacttcagattctgagg
gtatga

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