Cynara cardunculus var. scolymus (artichoke): 112524436
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Entry
112524436 CDS
T05604
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112524436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112524436
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112524436
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
HECT type E3
112524436
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
IFRD
Motif
Other DBs
NCBI-GeneID:
112524436
NCBI-ProteinID:
XP_024990008
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All DBs
Position
LG 13:40604425..40618601
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AA seq
1913 aa
AA seq
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METRSRKRAEATSSAPSSSSSGGPTTRSNKRTRLSSTTSSASPAAAAAASNVVVQSVCTR
SRASNMDTNTNEPFASGSGSGSGRTRRSGKNMNNPNVGLDKDNLDKGKEKENEVRVRHRD
RVNNRDNNLGLDKDRGGADDEDDEDNDSDGGGVGMLHQNLTSASSAFQGLLRKLGAGLDD
LLPSSAMASVSSSHQNGRLKKILSGLRADGEEGKQVEALTQLCYMLIIGTEDSLSTFSVD
SFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMD
LAEQSLQALKKISQEHPTACLRAGALMAVLSYYDFFSTGVQRVALSTAANMCKKLPPDAA
DFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIVEAFAASSDKQDELCNHGLVTQAASLIS
TSSSGGGQASLSPSTYTGLIRLLSTCASGSPLGSKTLLLLGISGILKDILSSSGLAATMS
VSPALSRPPEQIFEIVNLTNELLPPLPQGIISLPASTSLFVKGSLSKKSPVGGSGKQEDN
SGGTPEISGREKLLTEQPELLQQFGMDLLPVLIQMYGSSVNEPVRHKCLSVIEKLMYFST
ADMIQSLLGVTNISSFLAGVLAWKDPQVLLPSLQIADILMEKLPETFSKLFVREGVVHAV
DTLILAGSSGSALSQPLSTEKDNDSTPGSSSRSRRYRRRIGTSNADIPSAEDHKNSVPAV
GSPPNSVEVPTVNSSLRMAVSASAKAFKDKYFPSVPGAAEVGVTDDLLHLKNLCTKLGAS
ADEHKIMSKGKSKASVPRLVDFSPSKEENLLRVITEMLAELSKGDGVSTFEFIGSGVVDA
LLNYLSCGCFSKERVAEANLPKLRQQAIRRYKALIAVALPSDFDESKLAPMSVLVQKLQN
ALTSLERFPVMLSHSSRSSTGNARLSSGLSASPRSFKLRLCRAHGEKSLRDYSSNVLLID
PLASLAAVEDFLWPRVQRSESSHKPSASVGNSDSGNAPLGGSASSPSSTPSATRRHSTRS
RSSINIGNSAGKDTPVEKNASSSKGKGKAVLKPAQDEGRGPHTRNAARRRGASDKDTSMK
SVDNESTSEDEDVDISLVEIDDALVIEDDEISEDDDDDHDNALVLRGDSGAVYMPYVHDV
KLPDSAEDSPAGPATSDSQTNPACGSSSKGTPAQGSDSTEFRGGNSFGSRGAMSFAAAAM
AGLASANGRGIGGGRDRHGQALFGSNDSPRLIFSSGGKQLNRHLTIYQAVQQHLVLDEVD
DERYNSSDFVSSDGSRLWSDIYTVTYHRADSQSDRTSVGNVNSAKTTRSSKAGSTSNSNA
DSPMHQMSLLDSLLQGELPCDLEKNNPAYNILALLRVLEGLNQLAPRLRVQAVIDSFSEG
KFSSLNELNVTGPRVPADEFINSKLTPKLSGQIRDVLALCSGSLPSWCYQLTKACPFLFP
FETRRQYFYSTAFGLSRALHRLQQQQGADGHGSMNERELRVGPLPRQKVRVSRNRILDSA
TKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQRADLRMWRSNSLDVSMAME
VEPEGKKDGKTNDSGPASGRGAGNFIIAPLGLFPSPWPVAADSSGGGQFAKVIEYFRLLG
CVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDVSSFDAELGKTLQELQALVCRKQYLE
SMPGHDRNEIHDLKFRGAPIEDLCLDFTLPGYPDFVLKPGDEDVTIDNLEEYVSLVVAAT
VKTGIMRQMDAFRAGFNQVFDVLALQIFSPNELDYLLCGHRDLWEADKLAEHIKFDHGYT
SKSPAVVNLLEIMGEFNSEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTASNTA
TNAAGLSEPADDDLPSVMTCANYLKLPPYSTKEIMHKQLLYAISEGQGSFDLS
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtagccggaagagggcggaggccacctcatcagccccatcttcttcatcg
tccggcggtcccaccactcgttccaacaaacgcactcgtctctcttcaaccacctcctct
gcctccccagcagccgccgccgcagcttccaacgtcgttgttcaatcagtctgtactcgt
tcacgcgcttctaacatggataccaacacaaacgagccgttcgcttccgggtctgggtcc
gggtcgggtcgtacccgtcgcagtgggaagaacatgaataacccgaatgtgggactggac
aaggataatctggataaaggcaaagagaaagagaatgaagttagggttaggcatagagat
agagttaataacagagacaacaatttaggacttgataaagaccgtggcggagctgatgat
gaggatgatgaggataatgacagcgatggtggcggtgtggggatgttacatcagaatttg
acttctgccagcagtgcatttcagggtttgttaaggaaactaggtgcaggtttggatgac
ctgctcccgtcatcagcaatggcgtctgtttcctcatctcatcagaatggacggctaaag
aagattctttccggtttacgagctgatggggaagaaggaaagcaagttgaggcgttaact
cagttgtgttacatgcttattataggaaccgaggattcactaagcactttctcggttgat
tcttttgtgcctgtgcttgttggtttgcttaaccatgagagcaatcctgatattatgttg
cttgcagctagggcactcacacatttatgtgatgtgctaccgtcttcatgcgctgcagtt
gtgcattatggtgcggtttcttgctttgttgctagattgcttacgatcgagtacatggac
ttggctgaacagtccttgcaagctcttaagaagatatctcaggagcacccaactgcatgc
ttgcgggcaggcgcactaatggcagtgctttcgtattatgacttcttctctacaggagtc
cagcgtgtagcattatctactgctgcaaatatgtgcaagaaactaccacctgatgcagct
gattttgtcatggaagccgttcctttgttgacaaatcttcttcagtatcatgacgccaag
gttttggagcatgcatcagtttgcttgactcgaatcgtagaggcatttgccgcatcatct
gataagcaggatgagctttgcaaccatgggctggttacacaagctgcctcactcatttca
accagcagttctggaggtggacaggcatctctcagcccatctacatatacgggcttaatt
cgattgctttcaacctgtgcaagtggctctcctttaggatcaaagactttgctgcttctt
gggattagtggcattctcaaagatatattatcatcttctgggcttgctgcaaccatgtct
gtatcacctgccttgagtaggccaccagagcagatatttgagattgtgaatttgacaaac
gagcttcttcctccattgcctcaaggaatcatctctcttcctgccagtactagcttattt
gtcaaagggtctctttcaaagaagtcacctgttggcggttctggcaagcaagaagacaat
agtggtggtacaccagagatctcgggccgagagaaattattgactgagcaacctgagctt
ttgcagcagtttgggatggaccttcttcctgttctaattcagatgtatgggtcaagcgtg
aatgaacctgtgcgtcacaaatgtctctcggttattgagaaattgatgtacttcagcaca
gcagatatgatccagtctctacttggtgttacaaatatatcaagttttttggcgggagtt
ttggcatggaaagacccacaagtcctattgccttctcttcaaattgcagatatcctaatg
gaaaagcttcctgagactttctccaagctgtttgtgagagagggggtggttcatgctgta
gatacactgattttggctgggtcatctgggagtgctctttcccaaccattatcaactgaa
aaggataatgattctacacctggatcatcctcacgttctcgacgctatcgacgacggatt
gggacttctaatgcagatataccttctgctgaagatcacaaaaactcggtccctgctgtt
ggttcacctcctaattctgttgaagttcctactgtcaattctagtctccggatggcggtg
agtgcaagtgcaaaggctttcaaagataaatacttcccttcagttcctggagctgctgaa
gttggggttaccgatgatcttctacatttgaagaatctttgcacaaagttgggcgcttct
gcagatgagcataagataatgtccaaggggaagtctaaagcttctgtaccccggcttgtt
gatttttcacctagcaaggaagagaacttgttaagagtgataactgagatgctagcggag
ctaagcaaaggggatggtgtctccacatttgagttcattggaagtggtgttgttgatgct
ttgctgaactacttgtcttgtggatgcttttccaaggaaagagtggcagaagcgaatttg
cctaagctgcgtcaacaagccattagaagatacaaggcgttaatagcagttgcccttccc
tccgacttcgatgaatcaaaattggcccccatgagtgttctagttcagaagcttcaaaat
gcgttgacctcattagagcgttttccagtaatgctgagccacagttctagatcctctact
ggaaatgcacgcctctcttctggtctgagtgcatcgcctcggtcattcaaactgcgcttg
tgcagagcgcatggtgaaaaatctcttcgtgattattcgtcaaatgttctcctcatcgat
cctttagcgagcttggcagctgttgaagacttcctctggccccgggttcaacgcagcgaa
tctagccataagccttctgcttctgtcgggaactcagactctgggaatgcacctctagga
ggtagcgcttcatcaccttcttcgactccttcagctacccgtcgtcactccacaagatcc
agatcatcaattaatatagggaactcagctggaaaggacacaccagtagagaaaaatgca
agctcttcaaaggggaaggggaaggctgtcttgaagccagctcaagatgaggggagagga
ccccatacaagaaatgctgctcgaagaaggggtgcttctgataaagacacttcgatgaaa
tctgttgataatgaatctacatctgaggacgaggatgtagatatatcacttgtcgaaatt
gatgatgcattggtaattgaagatgatgaaatatctgaggatgatgatgacgatcatgat
aatgcattggtgcttaggggtgattcaggtgcagtttacatgccatatgttcacgatgtt
aaattgcccgactctgctgaggatagtcctgccggtcctgcaacaagtgatagccagaca
aatccagcttgtggttctagcagcaaaggaactccagctcagggctcagactccacagag
tttaggggtggaaattcgttcggttcaagaggtgcaatgtcatttgctgctgctgccatg
gctgggcttgcatcagcaaatggtaggggtattgggggaggtagagatcgtcatgggcag
gccctctttggctccaatgattctcccagactgattttttcttcaggtggtaagcaactc
aacagacatttaaccatctatcaagctgttcagcaacaccttgtcctggatgaggttgat
gatgagaggtataacagcagtgactttgtatctagcgatggtagcagactatggagtgat
atctacacggtcacctaccatagagcagacagccaaagcgataggacatcagttgggaac
gtaaactcagcaaaaacaactagatcatccaaagctgggtctacctcgaattccaatgca
gactcgcctatgcatcaaatgtctcttttagatagccttttgcaaggggaacttccttgt
gatttggaaaagaataatcctgcttacaatatattagctctactacgtgtattagagggt
ttaaatcagcttgcaccacgtttacgtgtccaggcagttatcgacagcttctctgaagga
aaattctcaagtctaaatgaattgaatgttactggtcctagggttcctgctgatgagttc
atcaatagtaaattgactccaaaattgtctgggcagattcgagacgtgcttgcactttgc
agtggtagtcttccatcatggtgttatcagctgacgaaagcatgcccattcttgtttcct
tttgaaactaggcgccagtatttctattcaactgctttcgggttgtctcgtgcattacat
cgccttcagcagcagcaaggtgcagatggccatggatctatgaatgagagagagttgagg
gttggaccattaccgcggcagaaagtccgtgtttcccgaaatcgtattttggattctgct
acaaaagtcatggagatgtattcaagccaaaaggctgttctagaagtagaatattttggt
gaagttggcactggactgggtcctactttggagttctatactcttttaagtcatgatctt
caaagggctgacctgagaatgtggagatctaattctttggatgtcagcatggcaatggaa
gttgaacccgaagggaagaaagatgggaaaacaaatgattctgggcctgcttctggcaga
ggtgccggcaactttatcatagcaccccttgggttgttcccaagtccttggcccgttgct
gctgattcttctggtggtggccagtttgccaaggtgatcgagtatttcagactccttggt
tgtgtaatggcaaaggctcttcaagatgggcggcttttggacctgcccctttcaactgca
ttctacaagcttgtgcttggacaagagcttgatttacatgatgtttcttcttttgatgct
gaactgggtaagacattgcaagagttgcaagcccttgtttgtcggaaacaatacctagag
tcgatgcctgggcatgaccgcaatgaaatacatgacttaaaatttcgaggggctccaatt
gaagatctctgtttggacttcacacttcccggctatcctgattttgttctaaaaccaggc
gatgaagatgtcactatagacaatttggaggagtacgtttcgcttgtagttgccgctact
gtcaagactggtatcatgcgccaaatggacgcattcagagccggtttcaatcaggtcttt
gacgttttggctctgcaaatattctctccaaatgaattggattatttgctttgtggccac
agagacttatgggaggctgacaaacttgcggaacacataaagtttgatcatggatatact
tccaagagccctgcagtggttaatttacttgagataatgggagaattcaactcggaacag
caaagggcattctgtcaatttgtcactggtgcacctcggctgcctcctggtggtttggca
gtgttgaatcctaagttgacaattgtgagaaagctttcttcaacagccagtaatactgca
accaatgcagctggattgtcggaacctgctgatgatgacttgccgagtgtgatgacatgt
gctaattacttaaagcttcctccttactccaccaaggagatcatgcacaagcaactcctc
tatgctatcagtgaaggacagggatcgtttgatttgtcatga
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integrated database retrieval system
