Cynara cardunculus var. scolymus (artichoke): 112524501
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Entry
112524501 CDS
T05604
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112524501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524501
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112524501
mRNA degradation factors
5'-3' decay
Decapping complex
112524501
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
112524501
NCBI-ProteinID:
XP_024990114
LinkDB
All DBs
Position
LG 13
Genome browser
AA seq
788 aa
AA seq
DB search
MERSDSKDLSSINTRSFSDGKLFDASQYAFFGRHSMDKAEFGCLEEDDDNPSTGIADDEY
HLFDREEEPGAGSQSELDDLSTIFSKINRSVSGPRHPGVIGDRGSGSISRESSSASDWVQ
DRDLPEWLDQHISDTESCQGSRRWSSQSHLTDSKPLYRASSYPQEQHQFFAEPVLVPSSS
LPSFSPGGGHNNLPSPRQRSHLNLSSGIGSPQMPFSEPNLSPLSNSSNLLLGGIPHGSRY
SGNRTQIVHPGLTQYTQPQNQWDNHTLHVDHAGLLTNSFQQKLLQNGFLSPHFMLPHSLR
QPSFNPFALQPYLYDTLPSHPLHLSKYGVADVRDQRSSQKSKHSARLSRQGSDSSNQKSD
KCRIQFRSKYMTSEEIEGILNMPHAATHSNDPYINDYYHQARLAKNSSESRSKNRFWPAH
LRDSPLRNRSGSDSQPHINVDSHGRISFSLIRRPEPLLEVDPPSGSGDGGSEQKRSEKPL
EQEPMLAARIMIEDGLCLLLDVDDIDRLLKSTLPQDGGSQMRQRRQILLEGLAASLQLVD
PLGVSSNTSAGLAPKDDIVFLRVASLPKGRKLMSRYLQLLSPSSELARIVCMTIFRHLRF
LFGGLPSEPGASETITTLAKIVSLCISAMDLNSLSACLAAVVCSPEQPPLRPLGSPAGDG
ASVILKSVLERATQLLTGVNSSLQNPTLWQASFDAFFGLLTKYCLSKYDSLVQAMYAQIP
PSTEIVFSEAAKAISREMPVELLRASLPHTDDNQRKMLVDFSQRSMHVAGFSGHKGSGGQ
VTPESVRG
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatagcaaagacttgagtagcatcaatacgcgttctttctcagatggc
aaactctttgatgcttcacaatatgctttttttggtcgacattctatggacaaggctgag
tttgggtgtttagaagaagatgatgataatccttcaactggaattgctgatgatgagtac
catttgtttgaccgagaagaggaaccaggtgcaggatcccaatcagagttagatgatctg
tcaactatattttcaaagataaacagatctgttagtggacctaggcatcctggagttatt
ggtgatcgaggatcgggatctatttcaagagaaagttcatctgcatctgactgggtacag
gatagagatctaccggagtggttagatcaacatatctccgacaccgaaagctgtcaggga
agcaggagatggtcttcacagtctcatctcactgattctaagccattgtacagagcgtca
tcataccctcaggagcagcaccagttcttcgctgaacctgtactggtaccaagctcgtct
ctgccttcgttttctcctggtggcggccataataatctaccctcaccacggcaacgttca
catctcaatctttcatctggcattggtagtccccagatgcccttttcagagccaaacctc
tcacctttatcaaatagctccaatctgcttttaggtggcatccctcatggatctcgttat
agtggaaaccgaacccaaatagtccatcctggcttaacccaatacactcagccacaaaac
caatgggataaccatactttacatgtggatcacgctgggctattaacgaatagttttcaa
cagaagttgcttcaaaatgggttcttatccccgcattttatgttgccacattctctacga
cagccttcgttcaatccttttgcactccagccatacttatatgataccctcccttctcat
ccactacatttaagtaaatatggagttgctgatgttagagatcagagatcgtcacaaaag
agtaaacatagtgcacgtctttcccgtcagggctctgatagcagcaatcagaagagtgat
aaatgccgtatacagttcagatccaaatatatgacatctgaagagattgagggcattctt
aatatgccgcatgctgcaacacatagcaatgatccatatataaacgattattatcaccaa
gctcgtcttgccaagaattcttctgagtcaaggtccaaaaaccgtttctggcccgctcat
ctgagagattctccactccggaatcgtagcggttctgattcacagccccatattaacgtt
gattctcatggaaggatttcattctctctcattcgtaggcctgaaccccttcttgaagtt
gatcctccatctggttctggtgatggtggttctgaacagaaaagatctgagaaacccttg
gaacaagagccaatgcttgccgctagaatcatgatcgaggatggcctttgcctacttctt
gatgtggatgacatagatcgcctcctgaaatctacgctgccgcaagatggtggttctcag
atgaggcagaggcggcagattctcttagaaggcttggcagcatcacttcagcttgttgat
ccacttggagtaagttccaacacctccgctggattggctcctaaagacgatatcgtgttc
ttacgagtagcatctctccccaagggtcgtaaactcatgtctagatatcttcaacttctc
tccccaagcagcgagcttgcacgaatcgtatgcatgaccattttccgtcacttgagattt
ttatttggcggccttccttccgaacccggagcgtctgagaccattactacgctagcgaag
atagtctcgttatgcatcagtgcaatggatctcaattccctgagtgcttgtcttgcagcc
gtggtttgttctccagaacaaccaccacttcgtcctctcggaagtccggctggcgatggt
gcttccgtcatcctaaaatctgttctcgaaagagctacgcagctgttaaccggtgttaac
tccagtttgcaaaatccaacactttggcaggcttcatttgatgcgtttttcggcctttta
accaagtactgtttaagcaagtacgatagtctggtgcaagctatgtatgcacagattccg
ccaagcacagagatcgtcttttctgaagctgcaaaggctattagtagagaaatgccggtg
gaacttcttcgtgctagtctaccccatacagatgataatcagaggaagatgttagtcgac
ttctctcagaggtcgatgcatgttgctggattcagtggtcataagggaagcggtggtcag
gtgactcctgaatcagtaagagggtga
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