Cynara cardunculus var. scolymus (artichoke): 112524653
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Entry
112524653 CDS
T05604
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112524653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524653
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112524653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
Zn_ribbon_RanBP
Vps36-NZF-N
zf-Sec23_Sec24
Kazal_2
Motif
Other DBs
NCBI-GeneID:
112524653
NCBI-ProteinID:
XP_024990348
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Position
LG 13:1325901..1338183
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AA seq
734 aa
AA seq
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MPRKVTYGVDFDDDYDIYDDYHDDNYNYDYGNGVDEHDSAWESPDTRQESVRQNVWRCPI
CTFDNEEYMSACDICGVLRNPLVRSSDNGQSSTDFFNAVGGICTNSGVSVMAKSLFASLP
CRSPKGAVNFQPQKDASSAEEDKFSYLHGNNRGKFHDLHKAIISEKQYKVNIAPFKFDIP
SPDDVVSMGMRSYKIGSKVAFDLKKPSTSDASSSKAKDNANLKSSAKSSNISAPLLSKDK
FEYVDDDSHVPISKTQTHGLSSDLNSITMSAKSGNSKIRNQGKIALRSQYKPEKWMLLDQ
TEDQLSQLNLAIVGHVDSGKSTLSGRLLHLLGKISQKQMHKYEKEAKLQGKGSFAYAWAM
DESAEERERGITMTVGVAFFNSSKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASL
GAFEAGIDSARGQTREHAQLIRSFGVDQIIVSVNKMDAVEYSKERFETIKLQLGAFLRSC
NFRDSSVSWIPLSAMENQNLVAPASDARLLSWYRGPSLLEAIDALQPPAREYSKPLLMPI
CDVIKLPSQGQVSAIGKLEAGALRNGSKVLILPSGEFGTVRSLERDSQACGIARAGDNVA
VSLQGIDVNHVLSGGVLCHPDFPVAVTNHLELKLLVLDVQMPILIGSQLEFHIHHAKEVA
KVAKIVSLLDSKTGKVTKKAPRCLLAKQSAIVEVVLQGEVCVDEFSNSRALGRAFLRSSG
TTVAVGVVTRVIVD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaagtaacatatggagttgattttgatgatgactatgatatttacgatgat
tatcatgacgacaattacaattatgattatggcaatggcgtagatgaacatgactcagct
tgggaatctcctgacacaagacaagaaagtgttcggcaaaatgtttggcgctgccccata
tgcacatttgataacgaggaatatatgtctgcgtgtgatatatgtggcgttcttcgcaac
cctctggtcagaagttctgataacggccaatccagtacagattttttcaatgcagttggt
ggcatatgcacgaactctggagtatcggtgatggcaaagtctctttttgcatcattgcca
tgtcggtcacccaaaggggctgttaactttcaaccacagaaagatgcttcttcagcagaa
gaggacaaattctcctacttgcacggaaataatcgaggaaaattccatgatttacataag
gccattatctctgaaaaacaatacaaggttaacatagcccctttcaagtttgatatccca
tctccagatgatgtggtttctatgggaatgcgatcatacaaaataggttccaaagttgca
tttgatttgaagaaaccgtcaacttctgatgcttcttccagcaaagctaaggacaatgcc
aacttgaagtcaagtgctaaatcttccaacatctcagcacctttgctttcaaaggataaa
tttgaatatgtggatgatgacagtcatgttcccatatctaagacacaaacacatgggctt
tccagtgacttgaacagtataaccatgagtgccaaatctgggaattccaaaatccgaaac
caggggaaaattgctctccgttcacagtataaacctgagaagtggatgctgcttgaccaa
actgaagatcaactgagtcagctaaatcttgctattgttggccatgtggattctggaaaa
tcgacactctcaggaaggctgctacatcttctggggaaaatatcacagaaacaaatgcac
aaatatgaaaaggaggctaaattacaggggaaaggttcctttgcttatgcatgggcaatg
gatgagagtgccgaagaacgagaaagggggataaccatgacagtgggagtggcttttttc
aactccagtaaataccatgttgtggtgctcgactctcctgggcataaagatttcgttcca
aacatgatctccggggcaacacaagcagatgcagcaattcttgttatagatgcatcactt
ggtgcatttgaagcaggcattgatagtgctcgaggtcaaacaagggagcatgcacagctg
attagaagttttggcgttgaccaaataattgtgtctgttaacaaaatggacgccgttgaa
tactcaaaagaacgttttgagactatcaaactgcaacttggagcatttctccggtcttgt
aacttcagagattcttctgtgtcatggattccattaagtgccatggaaaaccaaaatttg
gtggcaccggcttctgatgcacgcttgttatcctggtaccgcgggcctagtctgttggaa
gctatagatgctcttcaacctcctgctagagaatactccaagcctctactaatgcctata
tgcgacgttattaaactgccatctcaagggcaggtatctgcaatcgggaagttagaagct
ggagctcttcgtaatggaagcaaggttctcattctgccttcaggagagtttggaacagtg
cgttctttagaacgtgattctcaggcatgtggcatcgcaagagcaggagacaatgtagcg
gttagtctacaaggtatcgatgtaaatcatgtgttatctggtggtgtgttgtgtcaccca
gatttcccagtggcagtcacaaaccatttggagttaaagctccttgttttggatgtccaa
atgccaattctgatcggctctcagttggagtttcatatacaccatgcaaaggaagtagcg
aaggtcgcaaagatagtgtcattgttggattccaaaacggggaaggtaacaaagaaggcc
ccacgatgtctattagccaagcaaagtgcgatagttgaggtggtgctacaaggggaagtt
tgtgtggatgaattctctaatagcagagctcttgggagggcattcctaagatcatcaggg
acaacggttgccgttggtgtcgtaacccgagttatagtagactag
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