Cynara cardunculus var. scolymus (artichoke): 112524702
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Entry
112524702 CDS
T05604
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112524702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112524702
03041 Spliceosome [BR:
ccav03041
]
112524702
03036 Chromosome and associated proteins [BR:
ccav03036
]
112524702
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112524702
Spliceosome [BR:
ccav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112524702
Complex B
112524702
Complex C
U2 SnRNP specific factors
112524702
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112524702
TFTC complex
112524702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
112524702
NCBI-ProteinID:
XP_024990423
LinkDB
All DBs
Position
LG 13:complement(10923172..10929668)
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYNLTLQQATGIVCAINGSFSGGNKSQEIVVARGKVLELLRPDENGKIQTILSVDVFG
AIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGSRRIVPGQY
LAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYSIAGVDCGFDNP
IFAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPG
GGDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSATMHKQKSMFFFLL
QTEYGDVFKVTLDHDNERVTELKIKYFDTIPVSSSMCVMKLGFLFAASEFGNHALYQFQA
IGADPDVESSSATLMETDEGFQPVFFKPRGLKNLVRIDQVESLMPIMDMKVVNLFEEETP
QIFTLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANA
TLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGK
RTIVKVGSNRLQVVIALSGGEIIYFEVDMTGQLMEVEKNEMSGDVACLDIAPVPEGRQRS
RFLAVGSYDNTIRILSLDPDDCMQVLSLTSVSSPPESLLFLEVQASVGGEDGADHPASLF
LNAGLQSGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSVLVRGRRAMLCLSSRPWLGYV
HQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYT
PRKFVFHPKKKLLVTIESDQGAFPAELRESAKKECFEAAGQGENGKMEIENGGDDEDKDD
PLSDEQYGYPKAEADKWVSCIRVLDPKSTETTCLLELQDNEAAFSICTVNFHDKEYGTLL
AVGTAKGLQFWPKRSLTAGYIHIYRFVKDGRSLELLHKTQVDGIPLALCQFQGRLLAGIG
SVLRLYDLGKRRLLRKCENKLFPNTINSIHTYRDRIYVGDIQESFHYCKYRRDENQLYVF
ADDSVPRWLTAAYHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVTCLQKASLIPGGVECVMYGTVMGSLGALLAFNSRDDVDFFSHL
EMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLPLDIQRKIADELDRTPGEI
LKKLEEVRNKIV
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatctcactcttcagcaagccaccggcatcgtttgtgccatcaacggt
agcttctccggcggtaacaagtctcaagaaatagtcgtcgcccgtggaaaagtcctcgaa
ctcctgcgtccagacgaaaacggtaagatccagaccatactttccgttgatgttttcggt
gctattagatctctagctcagtttaggttaaccggtgcccaaaaagactacatcgttgtg
ggttctgactctggtcgtatcgtgattcttgaatataacaaggagaaaaatgtgtttgat
aaaattcaccaggaaactttcgggaaatcaggaagtcgtagaattgttccaggacagtat
ttagctattgacccaaaaggtcgtgctgttatgattggtgcttgtgaaaaacagaagctt
gtttatgttcttaatagggatactgctgctaggttgacaatttcgtcgccgttggaggct
cataagtcgcacactattacctactcaattgctggggttgattgtgggttcgataatcca
atatttgctgcgatagagttggattattcagaggctgaccaggattctaccggtcaagca
gcaaacgaggctcaaaagcatcttaccttttatgaactagatttagggcttaatcacgtt
tcaaggaaatggtctgagcaggttgataatggtgctaacatgctggtaactgttccgggt
ggtggggatggtccaagtggtgtccttgtttgtgccgagaattttgttatctataagaat
caaggtcatccggatgttcgtgcagtgattcctagaagggcggatttgcctgctgagcgt
ggggttcttatagtttcggccactatgcacaagcagaagtccatgtttttctttcttttg
caaactgaatacggggatgtctttaaggtgacacttgatcatgataatgagcgggttaca
gagttgaaaatcaagtattttgatactatacccgtgtcatcttcgatgtgcgtcatgaag
ttagggtttctgtttgctgcatcggagtttggtaatcatgctttgtaccaattccaggct
ataggagctgatcctgatgtggagtcatcatcggctacgttgatggaaactgatgaagga
ttccagccagtatttttcaagcctagagggttgaaaaatcttgttagaattgatcaagtg
gagagcttgatgcctatcatggacatgaaagttgtaaatctttttgaggaagagactcct
cagatttttacactttgtggtcgagggcctcgttcctctcttaggatattgagaccggga
ctggctattagtgaaatggctgtttcacagcttcctggtgttcccagtgccgtatggact
gtgaaaaagaatgttaatgatgaatttgatgcttacattgttgtttcatttgcaaatgca
actcttgtgctttctatcggagagactgttgaagaagttagtgacagtgggttccttgat
accacaccttcgcttgctgtttcgttaataggtgatgattctctcatgcaagttcatcct
agtggtattaggcatataagggaggatgggcgtattaatgagtggagaactcctggaaaa
agaacgattgttaaggttggatcgaacagacttcaagtggttattgctttgagtggaggg
gagatcatatactttgaggtagatatgaccggacagttgatggaagttgagaagaacgaa
atgtctggtgatgttgcttgtttggatatagctcctgtccctgaaggaaggcagagatct
cgttttcttgcagttggatcatatgacaacactatcagaatattgtccttggatcctgat
gactgtatgcaggttcttagcctgacaagtgtttcctcgcctcctgaatcgcttcttttt
cttgaggttcaggcttctgtaggtggggaggatggtgcagatcaccccgctagcctcttt
ctgaatgctggtcttcaaagtggggttctctttaggacagttgtggacatggtcactggc
cagctttcggatgcacgttccaggttcttaggactgagagctcctaaactcttctcagtg
ttagtgagaggacgaagagccatgctttgcttgtcaagtagaccatggcttggttacgtc
caccaaggacattttctgttgacacctctttcatatgaaactcttgaatacgctgcctca
ttttcatctgaccaatgtgctgaaggtgtggttgctgttgctggggatgctttaagagtc
ttcacaattgaaagattaggggaaacattcaatgaaactgctatacctttgaggtacaca
ccaagaaaatttgtgtttcatcctaaaaagaagcttttggtaacaatcgagagtgatcag
ggtgcgtttccagcagaactgcgagaaagtgcaaagaaggagtgctttgaggctgctgga
cagggagaaaatgggaaaatggagatagagaatggcggtgatgatgaagataaggatgat
cctctttctgatgagcagtatggctaccctaaagcagaggcggacaagtgggtttcttgc
atcagagttcttgatccgaagtcaacagagacaacttgtctgctggagcttcaggataac
gaggctgctttcagcatatgcacagtaaacttccatgacaaggagtatggaactctttta
gccgtgggtacagcaaaaggactccagttctggcccaaaagatctctgacggctggatat
attcatatttatcggtttgtaaaagatggaagatcgcttgaacttctacacaaaacccaa
gttgatggcattcctcttgcattatgccagttccagggaagattgcttgctggaataggg
tctgtgcttaggctttatgatttggggaaaagaaggctgcttagaaagtgtgagaataag
ctgttccccaatacaatcaattctattcatacatatcgtgatcgaatttatgttggagat
attcaggagtcatttcactattgcaaataccgacgagacgaaaatcagctatatgtattt
gctgatgactctgttccaagatggcttactgcagcataccatgtagacttcgacaccatg
gcaggtgcagacaagtttggaaacatttattttgtgcgcttgccacaagacgtatcagat
gaaattgaagaagacccaactggtgggaagattaagtgggagcaaggcaagcttaatgga
gctccaaacaaggttgaagagattgtgcaattccatgttggtgatgtggtcacatgcttg
cagaaagcatccctaattccaggtggcgtggagtgtgtgatgtatggaactgtgatgggt
agcttaggggcattgcttgcattcaactcccgtgatgatgtggacttcttttcccacttg
gagatgcatatgaggcaggaacatccacctttgtgtggaagagatcacatggcctatcga
tctgcctattttcctgttaaggatgtgattgacggagacctgtgtgaacagtaccccacg
ttgccactagacatacagcggaaaatcgcagatgaattggatagaactcctggggaaatt
ctgaagaaactggaagaagttagaaacaagattgtttaa
DBGET
integrated database retrieval system
