Cynara cardunculus var. scolymus (artichoke): 112524835
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Entry
112524835 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112524835
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112524835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccav03000
]
112524835
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524835
04121 Ubiquitin system [BR:
ccav04121
]
112524835
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112524835
Transcription factors [BR:
ccav03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112524835
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112524835
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112524835
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112524835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
Motif
Other DBs
NCBI-GeneID:
112524835
NCBI-ProteinID:
XP_024990555
LinkDB
All DBs
Position
LG 1:5106016..5114875
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AA seq
895 aa
AA seq
DB search
MSNEEEKRCPLCAEEMDWTDQQLKPCKCGYEVCVWCWHHIMDMAEKDATEGRCPACRTPY
DKDRIVGLEANFQRVAANCSSRKQKQPKAKQKPNEGRKDLSNVRVIQREMAYIIGLPLSL
ADEDLLQQKDYFGQYGKVTKVSLSRTAGGTVQQFVNDTCSVYITYSKEEEAVQCIQSVHG
YVLDGRLLRQVHNFLFLSLVFLGCCLAIVYIDCHLKFIFCRASFGTAKYCHAWLRNMPCN
NIGCLYLHSIGAEVDSFGKDEIAAVHTRNRVQEIVGATQYLHKRAGSMLPPPVDEHLINC
SASAEEPYFSSGLKDVAYAAVASGDHLPCSKDKDGIVRSSKHMTSFVDIVGRSCNSGSDK
DTNSIAEGRMLNLCSDMSSVCIDRSNHDKAESSDLVSSKSSTSGHFVNGLSGSKLYSEPF
REASKLHSVERADLTLKDTNIRKVQSGLALDSGREVRLNPCNPMREDSQTSGDQRWIDSV
ALSQKASLNPSYPADVIKNYSGHAWWHMESSSQNVDGADCNNVNNDADEASKLSTCTNSV
VNDGYNEKRFQSLAKSDRIYRCSKSFSNEEIVEHLRRLDDDTLVNDDENSANVESSIISN
ILSMDFDGCDDSVLPRTVAGLFEGKDGRHGSSWNFQNSDQSRFSFANDQGYTNQELEKFS
TFQDSGENQDSIYYPQHHASSAHNLIPPGFSKPPPGFPLCMRTEKVVSASSGNYGKKSLP
NNHYRTPSIGNLSNGSDDLIDPAIMVVERGKSSSFNMRSSSFDEETKLWRLMQQQQSVSA
TQHYHEHPQLSRTPSIMQQQQPPQIPSSWDDHYGDLSSRHQHHQSYSQRQYSQPNGYQQA
EQVNSRSEVGLAEQIQRNERLGLDKLLPGYSDYLFQMPSSGDVHPCIWNVNYSPS
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagaagagaagaggtgtccattgtgtgcagaagagatggattggactgat
caacaattaaagccctgcaaatgtggttatgaggtgtgtgtttggtgttggcatcacata
atggacatggcagagaaagatgcaacagaaggacggtgtcctgcatgtcgcacaccttat
gataaagatagaattgtagggttggaagcaaattttcagagggtggctgccaattgttct
agtcgaaaacaaaagcagccaaaagcaaaacaaaaaccaaatgaaggaaggaaggacctt
agcaatgttcgagtgattcagcgagaaatggcgtatatcattgggttacctcttagtcta
gctgatgaagatttattgcagcaaaaagattattttggccaatatgggaaggttaccaag
gtttccctttctcggacggcgggtgggactgttcaacagtttgtcaatgatacttgtagt
gtatatattacgtactcgaaagaggaagaggcagtgcaatgtattcaatctgtgcatggc
tatgtgctggatggtaggttgttaaggcaagtacataactttttattcctctcacttgta
tttctgggctgttgtcttgccattgtatatattgattgccatttaaaattcatattttgc
agagcatcatttggaacagcaaagtactgtcatgcatggttaaggaacatgccctgcaac
aatattggttgtttatatttgcatagtattggtgctgaagtagatagttttggcaaagat
gaaatagctgcagttcatactaggaatagagttcaggaaattgttggtgccacccaatat
ttgcataaacgggcaggaagtatgttgccaccaccggtagatgaacacttgattaactgc
agtgcttcggccgaggaaccttattttagcagtggtctgaaagatgtagcttatgctgca
gtagcttctggggatcacttgccctgttcaaaggacaaggatgggatagttagatcatcc
aaacatatgacatcttttgtagatattgttggaaggtcgtgtaattcaggttcagataaa
gatacgaactcgattgcagaagggcggatgctaaacctatgttctgatatgtcttctgtg
tgcatagatagaagtaatcatgacaaggctgaaagttcagatttagtatcgtcaaaatca
tcaacttctgggcatttcgttaatggattgtccggtagcaaattatatagtgagcctttt
agggaagcttctaaactacattcagtagaacgagctgatctaacacttaaggacactaac
attagaaaagtacaatctggtttggcattagattctggaagagaagtacggcttaatcca
tgtaatcctatgagagaagattcacaaacttctggtgaccagagatggatagattctgta
gctttaagtcagaaggcttccttaaatccttcttatcctgctgacgtgattaagaactat
agtggtcatgcttggtggcatatggagtctagtagtcaaaatgtcgacggtgcagattgc
aataatgtaaataatgatgcagatgaagcctctaaactgtctacatgtacaaattctgta
gtgaatgatggatacaacgagaagagatttcaaagtttggctaaatcagataggatatat
agatgctccaaatcattttccaatgaagaaatagtagagcacctcagacggcttgatgat
gatactcttgtgaatgatgacgaaaattctgctaatgttgaaagcagtataatatccaat
atattatctatggattttgatgggtgtgatgattcggtcttgcctcgaactgtagctgga
ttgtttgaagggaaagatgggcggcatggctcttcctggaacttccaaaatagtgatcaa
tctagattttcatttgcaaatgaccagggatatactaatcaagagttggagaaattttct
acttttcaagattctggggagaaccaggacagtatctattatccccaacatcatgcatcc
agtgctcataacttgataccgccaggattctccaaaccccctccagggtttcccttgtgc
atgagaaccgagaaggttgtttctgccagttctgggaattatgggaagaaatctttgcca
aacaatcattatcgtacaccatcaatagggaatctaagcaatggtagcgatgatcttatc
gatcctgccataatggttgttgaacgaggcaaatcatcgtcttttaacatgaggtccagc
tcctttgatgaagagacaaaactctggcgcttgatgcaacaacagcaatctgtgtctgcc
acacaacattatcatgagcatcctcaactttctcgaactccctccatcatgcaacaacag
cagccgccccagattccttcttcgtgggatgatcattatggtgatctctcttccaggcat
caacaccaccagagttacagccagcgtcagtactcacagccgaatgggtatcagcaggct
gaacaagttaacagtagaagtgaagtgggcttggcagaacaaatccagaggaatgagaga
ttagggttggacaaattgttgcctgggtacagtgattatttgttccagatgcccagttct
ggcgatgtacacccgtgtatttggaatgtaaattactcaccctcctaa
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