Cynara cardunculus var. scolymus (artichoke): 112525163
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Entry
112525163 CDS
T05604
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
112525163
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112525163
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ccav02000
]
112525163
Transporters [BR:
ccav02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
112525163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
112525163
NCBI-ProteinID:
XP_024990925
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Position
LG 1:complement(48831167..48853481)
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AA seq
1287 aa
AA seq
DB search
MKLCLGIYTAVVLLFVSISNAERSDTRILLTSNATLREQHGEDYCAMYDICGARSDGKVV
NCPFGSPSVKPDDLLSAKIQSLCPTISGNICCTEAQFDTLRAQVQQAIPFLVGCPACLRN
FLNLFCELSCSPHQSQFINVTSIAKVKNNSTVGSIDYYITDTYGEGLFESCKEVKFGTMN
SRAIEFVGAGAKNFREWFAFIGRKASPNLPGSPYAINFRSDADESIGMKPMNVTAYSCGD
TSLGCSCGDCPSSPVCSSSAPPSLHEKGSCSVRIGSLKARCVEVSVAIVYILLASLFLGW
GLFHKRGARNPALRTKPLVNVANGGLAQQVRGKKDENQMLDDIPQMSSGVQVSIVQGYMA
KIFRLYGTWVARNPILVLCSSLAVVLLLGLGLIRFKVETRPEKLWVGHGSRAAEEKLYFD
SHLAPFYRIEQLILATKPQAPHDKPPTIVTEGNIKLLFQIQDKVDGIRANYTGSLVSLTD
ICMKPLGEACATQSILQYFKMDPKNYDDYGGVEHAEYCFQHYTSDENCMSAFKGPLEPST
ALGGFSGNNYSEASAFIITYPVNNMIDKESNETKRAVAWEKAFIQLVEDELLPMLESKNL
TLSYSSESSIEEELKRESSADAITILISYLVMFAYISLALGDTPRFTSFYISSKVLLGLS
GVMLVMLSVIASVGFFSAVGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQMELPLE
DRISNALAEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAILLDFLLQVTAFVA
LIVFDFLRAEDHRVDCFPCIRISGSFVDTDQGSDQRKSGLLARYMKEVHAPILGIWVVKL
VVVSVFAALSLASIALCTRIQPGLEQQIVLPRDSYLQGYFNNVSEYLRIGPPLYFVLKNY
NYSSESRQTNQLCSINHCDSDSLLNEISKASLVPTSSYIAKPAASWLDDFLVWVSPEAFG
CCRKFTNGSYCAPDDQPPCCSMSDGSCSVNGVCKDCTTCFRHSDFQNERPTTPQFKEKLP
WFLSALPSADCAKGGHGAYTNSVELKGFEDGVIQASSFRTYHTPLNKQVDFVNSMRAARE
FSSRVSNSLKIEVFPYSVFYMFFEQYLDIWKTALISLAVAIGAVFIVCLVITCSFWSSGI
IVLVLVMILVDLLGVMAVLNIQLNAVSVVNLVMSVGIAVEFCVHITHAFMMSSGDRDQRT
KEALGTMGASVFSGITITKLVGVIVLCFSRTEIFVVYYFQMYLALVLLGFMHGLIFLPVV
LSMFGPPSRQVLAERKEDNKSSVSSPL
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttgtttggggatttatacggcggtggtcttgttgtttgtatctataagcaat
gcagaaaggtctgatacacgaatacttttgacatccaacgccacattgagggaacaacat
ggtgaagattattgtgcaatgtatgatatatgtggagcacgtagtgatgggaaagtagtg
aactgcccttttggttctccatctgtaaagccagatgacctcttatcggctaagatccag
agtttgtgtccaaccatttctgggaacatatgctgtacagaggctcaattcgacacattg
cgtgcacaagtccaacaagccataccttttctagttggatgtccagcgtgcttacgaaat
tttttgaatctcttttgtgagctttcatgctctccacatcagagtcaattcatcaacgtg
acttctattgctaaggtgaagaataattcaacagtgggctcgatagactactatataact
gacacctacggagagggtttattcgaatcctgcaaggaagtaaagtttggtaccatgaat
tcacgggctattgagtttgttggtgctggtgctaagaatttcagagagtggtttgctttc
attggccgaaaagcgagccctaatttgccaggttcaccctatgcaataaattttcggtca
gatgctgatgagtcaataggaatgaagcctatgaatgtcacggcttattcatgtggtgac
acatcactaggctgttcttgtggtgattgtccttcgtctcctgtttgttccagttcagcc
cctccatcacttcatgaaaaaggttcttgctcagtgaggatcggctctcttaaggcgaga
tgcgttgaagtttcagtagcaatagtttatatcttattggcctccttgtttcttggatgg
ggcttgttccataaaagaggagcaaggaacccagctttgagaaccaaaccattggtgaat
gtggctaatggtggtctagcacagcaggtccgtgggaaaaaagatgagaatcagatgttg
gatgatatccctcaaatgtcaagcggtgttcaggtttcaattgtgcaaggatacatggcg
aaaattttcaggttatatggaacatgggttgctaggaatccaattcttgtcttgtgctcc
tcactggctgtcgttcttcttcttggtttaggcttaatccgatttaaagtagagacacgg
ccggagaagctttgggtaggccatgggagtagagctgcagaagagaaactatactttgac
agccacctagcacctttctacagaatcgagcagctcatattggcaaccaaacctcaggct
ccacatgacaagccaccaactattgttacagagggaaatatcaagttgctgtttcaaata
caagataaggtagacggaattcgagcaaattatactggatcattggtttctttgacagac
atatgcatgaaacctctgggcgaggcttgtgccacacaaagtattctccagtatttcaaa
atggatcctaaaaactatgatgactatggtggtgttgaacacgctgaatactgctttcag
cattacacttctgatgagaactgtatgagtgcattcaaaggcccattagaaccaagcaca
gcattaggaggtttctccggtaacaactactctgaggcgtctgcatttataataacttac
cccgtgaacaacatgatcgataaggaaagcaatgaaactaaaagggcagtggcttgggag
aaggccttcattcagttagtggaggatgagctcctgccaatgctggaatccaagaacttg
acattatcctattcctctgaaagctctatcgaagaagaattgaaaagagaaagtagtgca
gatgctataacaattttgataagctaccttgtgatgtttgcgtatatatccttagcattg
ggtgacactcctcgcttcacttccttttatatttcttccaaggtattgcttggactttct
ggggtaatgcttgtgatgctctctgttattgcatcagttggttttttcagtgcagttgga
gtaaaatctacactcatcatcatggaagtgatcccttttcttgttttggctgttggggta
gacaacatgtgcattctggtacatgcagttaaaaggcagcagatggaattgcctttggaa
gaccgaataagtaatgcacttgcagaagttggaccatctataactctagccagtctatct
gaagtcctagcatttgctgtcggaagctttattcctatgcccgcttgccgggtattttct
atgtttgcagcactggctattcttttggactttcttctgcaagttactgcctttgtagcc
ttaattgtttttgactttctgagagcggaggaccacagggttgattgctttccttgtatt
agaatttccggttcgtttgttgataccgatcaaggtagcgatcagagaaaatctggatta
cttgctcgatatatgaaggaggttcatgcacccatcctaggtatatgggtggtcaaattg
gtagtcgtttctgtgtttgctgcattatcattggccagcatcgcgttatgtacaaggatt
caacctggtttggagcaacaaatagttctgccccgagactcatatcttcagggttatttc
aataatgtctcagagtatctcagaattggcccacctctttattttgttctcaaaaactat
aactacagttcagaatcacgacaaacaaatcaattgtgttccatcaatcattgtgattca
gactcccttttgaatgagatatcaaaagcatctctggtacctacatcaagctacatagct
aaacctgctgcttcatggcttgatgattttcttgtttgggtatctccagaagcttttggc
tgctgcaggaagttcactaatggaagttattgtgcccctgatgatcagcctccttgttgt
tctatgagtgatggttcgtgtagcgtaaatggagtttgcaaggactgtaccacgtgtttt
cgtcactcagatttccaaaatgaacgtccaactacaccacaattcaaggagaagcttcca
tggtttctcagtgctcttccttccgctgattgtgcaaaaggcggccatggggcttacacc
aatagcgtggaacttaaaggctttgaggatggtgttattcaagcatcctcctttcgtaca
tatcacacacccctgaacaagcaggttgattttgtcaattcaatgagggctgcacgagaa
tttagctcaagggtttccaattccttgaagattgaagtcttcccttattctgtattttac
atgttctttgagcaatatcttgacatttggaagacggcattgattagtcttgcagtagct
attggtgccgtatttattgtctgcctggttattacatgtagcttctggagctcgggtata
attgtacttgtgctggtgatgattcttgtggacctcctgggagtcatggctgttctgaac
atccaactgaatgctgtgtctgttgttaaccttgtgatgtcggtgggtattgctgtcgag
ttttgtgtacatataacacatgctttcatgatgagcagcggagatagagatcaacggaca
aaggaggctttgggtacaatgggtgcttcagttttcagcggaataacaattacaaagcta
gtaggagtaatcgtcctttgcttctcaagaaccgaaatatttgtggtttattacttccaa
atgtacctggccttggttcttcttggtttcatgcatggcctgattttcttaccagtggta
ctaagcatgtttggcccaccttcaagacaagttctcgcagagaggaaagaagacaacaag
tcttcggtttcatcaccgttataa
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integrated database retrieval system
