Cynara cardunculus var. scolymus (artichoke): 112525457
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Entry
112525457 CDS
T05604
Name
(RefSeq) nuclear pore complex protein NUP155
KO
K14312
nuclear pore complex protein Nup155
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112525457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112525457
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112525457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_N
Nucleoporin_C
Motif
Other DBs
NCBI-GeneID:
112525457
NCBI-ProteinID:
XP_024991359
LinkDB
All DBs
Position
LG 13:3887748..3898446
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AA seq
1493 aa
AA seq
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MSWENEIVMRDISKASLVVSDRIGRDVSAQLDLEEALEASRYTSHPYSTHPREWPPLVEV
VDSRELPSVLIERYNAAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYNGE
EQAICAVGLVKAKPGIFVEAIQYLLVLATPVELLLIGVCCSGSGDGTDPYAEVSLQPLPE
YTIPSDGVTMTSIACTNGGHIFLAGRDGHIYEMHYTTGSGWHKHCRKVCLTAGLGSVVSR
WVVPNVFKFGAVDPIVEMVVDNERHILYARTEEMKIQVYSLGPNGDGPLKKVTEEKNLIN
QRDLHNGGRQSAGSRAPARSAKTSIVCISPLSTVESKWLHLVAILSDGRRMYLSTTKSSG
NSGTVGSLGGFNSNLQKPSCLKVVTTRPAPPLGVGGGLSYGAIPLAGRTQHEDLSLKIES
AHYSSATLVLSDSSPSTTSSLLIVNRDSTTQSSSSASLGTGVRSSRALRECVSSLPIEGR
MLAVAEVLPLPDTAATVQSLYSQLEFCGYDNFGESSEKLAGKLWARGDLPTQHILPRRRI
IIFSTMGMMEVVFNRPVDILRRLLESNTPRAILEDFFNRFGAGEAAAMCLMLAARIVHTE
NFINNVVAEKAAEAFEDPRVVGIPQLEGSGALANTRTAAGGFSMGQVVQEAEPVFSGAHE
GLCLCASRLLLPVWELPVMVAGSGLGSSDATTGDGIVGCRLSVEAMQVLEDKLRSLEKFL
RSRRNQRRGLFGSVAGFGDMTGSILIGTGADLVTGDRSMARNLFSPYSRNLESSEAGTSN
KRQRVPYSSAELASMEVRAMECVRQLLLRCGEALFLLQLLSRHHVTRLLQGFDGNTKQAL
VQLTFHQLVCSEEGDRLATRLVSALMEYYTGPDGRGTVDDISGRLREGCPSFYKESDYKF
YLAVECLERAAAASNNDERETLARDAFSKLSGVPESADLQTVCKRFEDLRFYEAVVRLPL
QKAQALDPAGDALNEQIDAGVREHALAQRERCYEIITSALCSLKGEVSPREFGSPIRPSA
QSSLSPAARKKYICQIIQLGVQSSDRIFHEYLYRMLIDLGLEDELLEFGGPDLVPFLQNA
GREPTQEVRAVSALTSGASPLRHSGAPIPSSQTKYFELLARYYVLKRQHVLAAHVLLRLA
ERRSSGLENFPTLEQRRQYLSNAVIQAKSASDSDGLTNSSRDSGLLDLLEGKLTVLHFQI
KIKGELEGIVSSLEASPSTSENAPNNSLPDRNHSPEANFLHSAKEKAKELSLDLKSITQL
YNEYAVPFELWEICLEMLYFASYSGDTDSSIVRETWARLIDQALSKGGIAEACSVLKRIG
SHVYPGDTAVLPLDTLCLHLEKAASERLGSGVEAVGDEDVARALVAACKGAVEPVLNTYD
QLLSSGAILLSPSLKLRLLRSVLVVLREWAVSVSARGMGTSSTGASLILRGTFSMDQRTS
INHGIRDKITSAANRYVTEVRRLALPQTQTETVYRGFKELEESLLTSFSFDRF
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggagaacgagatcgtaatgcgtgatatcagtaaagcaagtcttgtagtgagc
gaccgtatcgggagagatgtttcggctcaacttgacctagaagaagccctagaagcttct
agatatactagccatccttactctactcaccccagagagtggcctcccttggttgaagtg
gtagatagcagggagttgccctcagtactcatagaaagatataatgcagctggaggggaa
ggcactgctttatgtggaatatttcctgagattcgtagagcatgggcgtctgtagataat
tctttatttctttggcgttttgataagtgggatggccaatgccctgaatacaatggtgag
gaacaagctatctgtgctgttgggttggtcaaagctaagcctggcatttttgttgaggct
atccaatatcttttagtcttagcaactccagtcgagttgcttcttattggagtatgctgc
tctggaagcggtgatggaacagatccgtatgctgaggtctcattacagcctctaccagaa
tacacaataccatcagatggagttaccatgacatctattgcatgtacaaatggtggtcat
atttttttggctggacgtgatggacatatatatgagatgcattatactactggttcaggt
tggcacaaacactgccgtaaagtttgtttgactgcaggtttgggtagtgttgtttcaagg
tgggtggtaccaaatgtattcaagtttggtgctgtagatcccattgttgaaatggttgtt
gataatgagagacacattttgtatgcccgtactgaagaaatgaaaattcaagtctactca
ttaggtccaaatggtgatggaccacttaagaaggtgacagaggagaagaatttgatcaat
cagagggatctacataatggtggcaggcagtcagcaggatcaagggctcctgctcgatcg
gcaaaaacttctatagtttgtatatctcctttatccacagtagagtcaaaatggctacat
cttgttgcaattttatcggatggtaggaggatgtatctttcaactactaaatccagtgga
aacagtggcactgttggcagtttaggtggattcaatagtaatcttcagaagccaagttgc
ttaaaggttgtcacaaccagacctgcacctcctttgggagtgggtggtggtctgtcatat
ggggcaattcctcttgctggtagaactcagcatgaagatctttccctaaagatagaatca
gcacattactcgtctgcaacactcgtactttctgattcatctccttcaaccacgtcttca
cttctgattgtaaatagggattcgactacacagtcatcatcatctgctagtttagggaca
ggtgttaggagttctagggcattaagagaatgtgtttcttccctaccaattgaaggtcga
atgctggctgtggcggaagtgctacccttgcctgatacagctgccacagtgcagtcgctg
tattcacaactggagttttgtggatatgataactttggagagtcttctgagaagttggct
ggaaaactctgggctagaggtgacctgccaacacaacacatactaccaaggcggcgaatt
atcatttttagtactatggggatgatggaagttgttttcaatagaccagtagacattctg
agaaggctgctagagtccaacacaccaagagcaatattggaagacttcttcaatcgtttt
ggtgctggtgaggctgctgcaatgtgtctaatgctagctgcaaggatagtccatacagag
aactttataaacaatgttgttgctgagaaggcagcagaagcctttgaggatccaagagtt
gttggaataccccagcttgaaggtagtggggcattggccaataccagaactgctgctggt
ggatttagcatgggacaggttgttcaagaggccgagcctgttttttcaggtgctcatgaa
ggactatgtttgtgtgcatcaaggttacttctgcctgtgtgggagcttcctgttatggta
gcagggagtgggttgggttcttctgatgctacgactggagatgggatagttgggtgcagg
ctttctgttgaggcaatgcaagttcttgaagacaagcttcgttctctggagaagttctta
agatccagaaggaatcaaagaagaggtctctttggtagtgttgctggttttggagatatg
acaggttctattctaattggaacaggtgctgatctggtgactggtgaccggagtatggca
aggaacttatttagtccttattctcggaatttagagtctagtgaagcaggcacctctaat
aaaaggcagcgggtcccatacagctccgcagaactggcttccatggaggtaagggcaatg
gagtgtgtaagacagctgctccttagatgtggtgaagctctatttctcctccaacttctt
tctcgacatcacgtgactcggttgcttcaaggctttgatgggaatacgaagcaggcatta
gttcagttgacgtttcaccagctagtctgttctgaagagggtgacagacttgctacaaga
cttgtatctgctctgatggagtactacactggtccagatggcaggggaactgtagatgat
attagtggcaggttacgggaaggctgtccaagcttctacaaagaatctgattacaaattt
tacttggctgtggaatgtcttgaaagagccgctgctgcttctaacaatgatgagagggaa
acacttgctagagatgccttcagtaaattaagcggagttcccgagtctgcagatcttcaa
actgtatgcaaacgctttgaggacttgagattttatgaagctgtggttcggttgcctctg
cagaaggcacaggctctagaccctgctggtgatgctcttaatgagcaaatagatgctgga
gttcgagaacatgcacttgctcagagagaacggtgctatgagatcatcaccagtgcttta
tgttctctgaaaggagaagtttcacccagagaatttggttctccaatcagaccatctgct
cagtcatcccttagtccagctgctcggaagaagtacatatgtcagattattcaacttggt
gtgcaatcatctgatagaatctttcatgagtatttgtaccggatgttgattgatttgggg
ctagaggatgaactcctggagtttggagggccggatttagtgcctttcttacagaatgct
ggtcgtgaacctacacaagaggtccgggcagtttctgctttaacatcaggagcttctcca
ttgcgccattccggagcacccattccttcttctcaaacaaagtattttgagcttttagca
cgatactatgtgctaaagaggcagcatgttcttgcagctcatgtactattacgattagct
gagaggcgttctagtggtttggaaaatttccccacacttgagcaaaggcgccaatacttg
agcaatgcggttattcaggcaaaaagtgcaagtgacagtgatggtctgacaaattcatcc
agggacagtgggctactagacttacttgaggggaagctaaccgttctgcacttccaaata
aaaatcaagggggaactggagggaatagtttctagtttggaggcttcccctagtacatct
gaaaatgccccaaataattctttaccagataggaaccactctcctgaggccaacttttta
cactctgcaaaggaaaaggcgaaggaattgtctctggacttgaaaagcatcacccaacta
tataatgagtatgctgttccatttgagctttgggagatatgtttggaaatgctatatttt
gcgagctattctggtgataccgacagtagcattgtgagagaaacctgggccagactcatt
gatcaggctctctccaaaggtggcattgctgaagcttgttcagtactgaagaggattggt
tcacatgtttatcccggagacactgctgttttacctttagatacattgtgtctacatcta
gaaaaagctgcatcggaacgattgggttcaggggttgaagctgttggtgatgaagatgtt
gctagagctcttgtggcagcttgcaaaggggcagtagagcctgtgctcaatacctacgat
caattgttatctagtggcgcaatcttgctgtcaccaagcctgaaattacggcttctccgg
tcagtattagtagtgcttcgcgaatgggcagtgtcagtttctgcacgcggaatgggcaca
agctcgaccggggcttctctcattcttcgtggaaccttttcaatggatcaaagaacttcc
attaaccatgggatccgtgataagatcacaagtgccgcaaacaggtatgtgactgaagta
aggagattggccctgccacagacccaaacggagactgtatacagaggtttcaaagagctt
gaagaatcccttttaacctctttttcttttgaccgattttga
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