Cynara cardunculus var. scolymus (artichoke): 112525858
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Entry
112525858 CDS
T05604
Name
(RefSeq) E3 ubiquitin-protein ligase RNFT1-like isoform X1
KO
K22379
E3 ubiquitin-protein ligase RNFT1 [EC:
2.3.2.27
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112525858
Enzymes [BR:
ccav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112525858
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112525858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-rbx1
Prok-RING_4
zf-C3HC4_4
zf-RING_6
zf-RING_16
RING_XB3-XBAT31
zf-ANAPC11
zf-Nse
zf-C3H2C3
zf-RING_10
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112525858
NCBI-ProteinID:
XP_024991919
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All DBs
Position
LG 13:complement(18272168..18278806)
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AA seq
457 aa
AA seq
DB search
METAGVSVDTTNSDHLAPSNPLSPSTRTTSSTSSSSFPVIRFLQAPVTTVLEYSGVFRPR
SNNDYPESESLIPNHHHHHDHDIRSSSDSDTATSSNGDNGEVSIRIIGAANPEEQHGRED
GEPAGAAMNGGDGGRGEREMADSSDVDGGNGGSGSHSDSSYQQRYDMQQVSRWIEQILPF
SLLLLIVFIRQHLQGFFVTIYVTTFMYKSNDILRKQTALKGERRLSVLAGYFIVFVLHVI
GVYWWYQNEDLCDPLFMVPPTAIPPFWHAIFTIIVNDTMVQQAAMAFKLVLLMYYRNGKG
HNFRRQGQMLTVVEYGLLLYRAFLPAPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSIVE
KVGSFWTALKALSRKEVHYGSYATPEQQVIEAGDLCAICQEKMQAPVLLRCKHIFCEDCV
SEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagcaggtgtcagcgttgataccacgaattctgatcatttagctccgtcaaat
cctttatctccgtcaacaaggactacgagtagtactagttcttcgtcgtttcctgtaatt
cgatttctacaagcacctgtaactactgtattggagtattctggtgtttttcgacctagg
tcaaacaacgattaccctgaatcagagagtctgattcctaaccaccatcatcatcatgat
catgatattcgtagttccagtgattcagatacggctacgagtagtaatggtgataatggg
gaggtttccattcggattatcggtgctgcaaatccagaagaacaacatggtagggaggat
ggtgaaccggccggggctgccatgaatggcggagatggtggtagaggagagagagagatg
gctgattccagtgacgttgatggtgggaatggtgggagtgggagtcatagtgattcatcc
taccaacagcggtatgatatgcagcaggtttcgaggtggattgagcagattcttccattt
tcactgctgttgttaattgtgttcatccggcagcacttgcaagggttctttgtcacgatt
tatgtaaccactttcatgtacaagtctaatgatattcttcgaaagcagacggctttaaag
ggggagagaagactttctgttcttgctggttattttatagttttcgtgcttcatgtgatt
ggagtatactggtggtaccaaaatgaagatctttgtgatccattgttcatggttccacca
acagcaataccaccattttggcatgccatattcaccatcattgtgaatgatacaatggtg
cagcaggcagcaatggcttttaagttggtattgcttatgtattataggaatggcaagggc
cataatttccgtaggcagggtcaaatgctgaccgtggtcgagtatggactgctgttatac
cgtgctttcttacctgcgccagtctggtaccgtttctttttaaacaaagaatatgggagc
cttttttcatctttgacaacggggttatatttaacattcaagctcacatcaatagttgag
aaggttggatccttctggactgcattgaaggcgttgtcacgaaaggaagtccattatgga
tcctatgcaacaccagaacagcaggtaattgaagcaggagacttgtgtgctatttgccag
gaaaagatgcaggctcctgttttgttgcgatgcaaacacattttctgcgaagattgtgtt
tcagaatggttcgaaagagagagaacgtgtcccctatgcagggctttggtgaaaccagcg
gatttacggtcatttggggacggatcaacaagcctcttcttccagttgttctaa
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