Cynara cardunculus var. scolymus (artichoke): 112525965
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Entry
112525965 CDS
T05604
Name
(RefSeq) clathrin heavy chain 1
KO
K04646
clathrin heavy chain
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04142
Lysosome
ccav04144
Endocytosis
ccav05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112525965
04142 Lysosome
112525965
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112525965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112525965
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112525965
Membrane trafficking [BR:
ccav04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112525965
Exosome [BR:
ccav04147
]
Exosomal proteins
Proteins found in most exosomes
112525965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Motif
Other DBs
NCBI-GeneID:
112525965
NCBI-ProteinID:
XP_024992069
LinkDB
All DBs
Position
LG 13:12973700..12985918
Genome browser
AA seq
1701 aa
AA seq
DB search
MAAANAPITMKEALTLPSVGINPQFITFTNVTMESDKYICVRETSPQNSVVIIDMSMPMQ
PLRRPITADSALMNPVSRILALKAQLPGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWI
TPKMLGMVTQTSVYHWSIEGDSEPAKMFDRTANLSNNQIINYRCDPSEKWLVLIGIAPGS
PEKPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVPGNENPSILISFATKSSNAGQVTS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTSEASSVGGFYAVNRRGQVLLATVNESTIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNQPEHAHLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFVRALQHYSELPDIKRVIVNTHAI
EPQSLVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVEACIKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKAKNFLMEA
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELVNVTNKNSLFKLQARY
VVERMDADLWEKVLDPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQSIPRAVEFAFRVEEDAVWSQVAKAQLRDGLVSEAIE
SFIRADDATQFLDVIRASEDTECYHDLVKYLLMVRQKTKESKVDSELIYAYAKIDRLSDI
EEFILMPNVANLQNVGDRLFDEALYEAAKIIYAFISNWAKLAVTLVRLQQFQGAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTVMNHSPDAWDHMQFKDIVVKVANVELYYKAVHFYLQEHPDLINDVLNVL
ALRVDHTRVVDIMRKAGHLHLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSITLSKKDKVYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRADVALELAWLNNMIDFAFPYLLQFIREY
TGKVDELIKDKIEAVKETKAKENEEQDVIKQQNMYAQLLPLALPAPPGMGGGYGQPGPPP
PMGGMGMPPMPPFGMPQMGSY
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgctaacgctccgattactatgaaggaggcactcacgttgcccagcgtaggc
atcaatccacagtttatcacgtttaccaatgtcacaatggagtcggataagtacatttgc
gtccgtgaaacatcacctcagaatagtgtggtgattatcgatatgagcatgcctatgcag
cctctgaggaggccaattaccgccgattcagctcttatgaatcctgtttccaggatactg
gctttaaaagctcaactgccagggactactcaggaccacttacagatatttaatattgag
atgaaagccaagatgaagtcctatcagatgcctgagcaggttgtcttttggaagtggatt
actccaaagatgttgggcatggtaacccagacctcagtatatcattggtcaatcgagggt
gactctgaacctgcaaagatgtttgatagaacagccaatttatcaaacaatcagataatt
aactacagatgtgatccatctgagaaatggttggtgttgattggaattgcccctggctca
ccagagaaacctcagctagtaaaaggaaacatgcagcttttttctgttgatcagcagcgc
agtcaagctcttgaagcacatgcagcatcctttgcctctttcaaagttcctggcaatgag
aatccttcgattcttatttcttttgcaacaaaaagctctaatgctggacaggttacatca
aagcttcatgtaattgagctgggtgctcagccagggaaaccctcgtttactaagaaacaa
gcagatcttttcttccctcctgactttgcagatgattttccagttgccatgcagatatcc
cacaaatatagtttgatctatgtaattaccaagctgggacttctatttgtgtatgacctt
gaaacagctaccgcggtgtataggaatagaatcagtccagatccaattttccttacctct
gaagcttcatccgttggaggcttctatgctgtcaatagacgtggccaggtgttacttgcc
actgtaaatgagtcaacaatcgtgcctttcgtcagtggacaattaaacaacctggagctt
gctgtcaatcttgctaaaagaggaaaccttcctggtgcagagaatctggttgtccaacga
tttcaagaattgtttgctcaaaccaagtacaaggaagctgctgagcttgctgcagaatct
cctcaaggcattctccgtacaccagatacagttgcaaaatttcagagtgtacctgtgcaa
gctggacaaacaccaccattgctgcagtactttgggacccttctaactaaaggaaagctg
aatgcatttgaatccttggagttatctcgtcttgttgtgaatcagaacaagaagaatctt
ttggaaaactggttggctgaggataagctggaatgtagtgaggagcttggagatcttgtg
aaaactgtggacaatgatcttgcattgaaaatttacattaaagcaagagcaacaccaaaa
gttgttgcagcttttgctgagcggagggagttcgacaaaattctgatctactccaagcag
gttgggtatacacctgattatttatttcttctgcaaacaattcttcgatcagatcctcag
ggtgctgttaattttgctttaatgatgtcccaaatggagggaggttgtccagttgattac
aatacaataacagatcttttcctccagaggaatttgatacgggaggctactgcttttctt
ttggatgtccttaagcccaatcagccagaacatgctcacctgcaaactaaggttcttgaa
atcaaccttgtgacattccctaatgttgctgatgccatattagccaatggtatgttcagt
cactatgaccgtcctcgcattgctcaactttgtgagaaagcaggtcttttcgttcgagcc
cttcagcattacagtgaactgccagatattaaacgtgtcattgtgaacactcatgcaatt
gagccacagtctctcgtagaattctttggcacactatcaaaggagtgggcactggagtgt
atgaaggatcttttactggtcaatctaaggggaaaccttcagataattgtgcaggttgcc
aaagaatactgtgagcagctgggtgttgaagcatgtatcaaactctttgagcaatttaaa
tcatatgaaggcctatacttctttttggggtcgtatttgagctccagcgaggatcctgat
atccacttcaagtacattgaggcagctgcaaagacaggacaaattaaggaggttgagcgt
gtaacaagagagtcgaatttttatgatgctgaaaaggccaaaaattttctaatggaagcc
aaacttcctgatgcaaggccattgatcaatgtgtgtgaccgttttggctttgtcccggat
ctcactcactatctctataccaacaacatgctccgttatattgaaggttatgttcagaag
gtcaacccagggaacgctcctttagttgtaggacagcttttagatgacgagtgtcctgag
gatttcatcaaaggcttgattctatctgttcgttctctgcttccagttgagccccttgtg
gatgagtgtgaaaagaggaaccgacttcggttacttacccagtttttagagcatcttgtg
agtgaaggaagtcaagatgtccatgtccacaatgctttgggtaaaattatcatagatagt
aacaacaatccagagcacttcctcaccaccaacccgtattacgattcacgtgttgtcggt
aaatactgtgagaagcgtgatcctacgcttgctgttgttgcatatcgcagagggcaatgt
gacgaagaacttgtcaatgtaacaaacaagaattctctgttcaagctgcaagccagatat
gttgtggagaggatggatgctgatctctgggagaaggttcttgaccctgagaatgaatac
aggaggcaactcattgatcaagttgtctcaactgctttgcctgaaagcaagagcccggag
caggtttctgctgctgttaaagcttttatgactgctgatcttccccacgagttaatcgag
cttcttgagaaaattgtccttcagaactccgctttcagtggaaacttcaacctccaaaac
ctgcttatcttgacagccatcaaggctgatccatctcgagtgatggactacatcaataga
ttagataactttgatggacctgctgttggagaggtggctgtagaagcacaactgtatgaa
gaggcatttgcaatattcaagaagttcaacttgaatgtgcaagccgttaatgttctgtta
gataatatccaaagtattccacgggctgttgagtttgccttccgtgttgaagaagatgct
gtttggagtcaggtggccaaagcccagctcagggacgggctagtgagtgaggcgatagag
tcgttcattcgtgccgatgatgctacccaattcttggatgtaatccgtgcttctgaagac
acagagtgctaccatgatttggtgaaatatctactgatggtgagacagaagaccaaggag
tccaaggtggacagtgagctcatctatgcgtatgccaagattgatagattgagtgacatt
gaggagttcatcctcatgccgaatgttgccaacctccaaaatgttggtgatcggttgttt
gatgaagcattgtatgaagctgctaagataatatacgctttcatctccaactgggcgaag
cttgctgtcacacttgtaaggctgcaacagtttcaaggtgctgtcgatgccgctcgtaaa
gcgaatagtgcaaagacatggaaagaagtttgctttgcctgtgttgatgctgaggagttc
cgcttggctcagatctgtggtctcaatattattgtgcaggtggatgatctggaagaggtg
agtgagtactaccaaaatagaggatgcttcaatgagcttatctctctcatggagagtggt
ctaggtttggagcgagctcacatgggcatcttcaccgagttgggtgtgctttatgccaga
taccgttatgagaagctgatggagcatattaaacttttctcgacacgcctcaacatccca
aagctaatccgtgcttgtgatgaacaacagcactggaaggaacttacctatttgtatatt
caatatgatgagtttgataatgctgcaactactgtcatgaatcattctccagatgcttgg
gatcatatgcagttcaaggatattgtagttaaagtggcgaatgtggagctctattacaag
gctgttcacttctacctacaagagcatcccgaccttatcaacgatgttctcaatgtcctt
gcactacgtgttgaccatacacgtgtggttgacataatgcgtaaggcgggacaccttcat
cttgttaaaccatacatggttgcagttcagagcaataacgtatctgctgtaaacgaggca
ctgaatgaaatatatgttgaggaggaagactatgatagattgcgtgaatctattgattta
catgataactttgatcagattggccttgcacaaaagattgagaaacatgagcttcttgag
atgaggcgtgttgctgcatatatctacaagaaagcaggtagatggaagcaatccattaca
ttgtcgaagaaagacaaggtgtacaaagatgccatggagactgcctcacaatctggggat
cgtgagcttgcagaagagctgcttgtttatttcattgagcagggaaagaaagagtgcttt
gcttcctgtctctttgtttgttatgatctcattcgcgcagatgtggctcttgagctggcc
tggttgaacaacatgatcgactttgccttcccatatctgcttcagtttatccgtgaatat
actggcaaggttgatgaactaatcaaggacaagatagaagcagtgaaggagactaaagcc
aaggagaatgaagagcaggatgtcatcaaacagcagaatatgtatgcccaactactgcca
cttgctctacctgcgccaccgggtatgggtggtggatatggtcaacctggaccaccaccg
ccaatgggtggaatgggaatgccaccaatgcctccatttggaatgccacaaatgggctcc
tattga
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integrated database retrieval system
