Cynara cardunculus var. scolymus (artichoke): 112526033
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Entry
112526033 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112526033
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112526033
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Meiosis-specific proteins
Others
112526033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
HHH_5
Cdd1
IMS_HHH_1
DNA_pol_lambd_f
AAA_22
T2SSE
Motif
Other DBs
NCBI-GeneID:
112526033
NCBI-ProteinID:
XP_024992174
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All DBs
Position
LG 13:complement(240816..250280)
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AA seq
1115 aa
AA seq
DB search
MDSYSLKSVSDLPDPFRSTFSFRYFNSLQSECFSACFHSDMNMVISAPTGSGKTVLFELC
ILRLLSKFISQEGRFIHMKGTLKTIYISPSKALVQEKLRSWNQKLGSWGINCLELTGDNE
SYSVRNIQEADIVLTTPEKFDAVTRFGIKDGGLSFFSDISLVLIDEVHLLNDPRGAALEA
IVSRIKMISCSPQMGKSPLAHVRFLAVSATIPNIDDLAEWLMVPIQGIKRFGEEMRPVKL
TTKVFGYAPAKNDFLFEKRLQNYIFDLLMQYSSGKSALVFCSTRKGAQEAAQRLSQTVMT
HGYSNPFIKSRDQQERLKEASLSCGDKQMQSYILYGVGYHNGGLSPKDRNLIEGLFLNGD
LQVLCTTNTLAHGINLPAHMVIIKSTQHFNKEKGIYMEYDRSMILQMCGRAGRPPFDDTG
MVIIMTRRETVHLYENLLGGCELVESQLLSCVTEHLAAEVVQLTVPDITRAIEWMKCSYL
YVRMKKNPQNYAVKKGLSNTHVEKHIQEVCVQKVNELAHYQMIWTDEDGFLLKPLEPGRL
MTKYYLKFDTMKHIMKAPSSCSIEDALHIVCRAEEISWIQLRRNEKKLLNDINTDKDGRL
RFHILGDKGKKKRRIQTREEKLFILANDCLTGDPLAHDLSLTQDMNSVCSNGCRIAKCMK
EYFIYKMNYKGALNSILLAKSLHQKLWEDSPYLLKQLPGIGMVTAKALQSMGVKSFETLS
EADPRKIEMVTGRKFPFGNHIKESLLSLPPKVDMKVEEISCPNYGKSKLVMTLTRLSQSP
QATKRHYADMVVATEEDNMIVFHEKIRVEEFTSPYSATILVTSPLQGKLTVKADLIFEEF
IGIDIHEKVILMKDINSHIYHDHGMKKLSLPQPSNVYIVDPDNDHLPQSPTRKPQKSLKS
KTEEASMPSFKLLDEDSDEGERVVENNDDDCKIITEITVFDHIREKAKSLPFLAATPSTE
HPPSLETLSLIRKRTHNRQLVLNELLESSNNSSEESSEPDGGTSTRSNMLTGDTIFEHIR
KKSKCFPRVDEIKSLTTKSSIPDFDFDFDLSAGAESNDQVHKGTLTILDLEAVKPKGKAN
NEEKSPGLAKRQSCSLATAGETDPFLGFKSVFSFL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggattcatactcacttaagtctgtctcagatctacctgatcccttccgttcaactttt
agtttcaggtattttaactcgctgcagagtgaatgtttttctgcttgtttccactccgat
atgaacatggttatttcagcaccaacaggcagtgggaagacggtgctttttgagttatgc
atattgaggcttctgtcaaagttcatctcccaggaaggaagatttattcatatgaaggga
actctaaaaacaatatatatatccccatccaaggctttggtacaagagaagctccggagt
tggaaccagaagctcgggtcatgggggataaattgcttggagcttactggggataatgaa
tcctacagtgtaaggaatatacaagaggcagacattgtcctgactactcctgagaagttc
gatgcagtgactaggtttggcatcaaagatggtggcctaagcttttttagtgatatatcg
ctagtacttattgatgaagttcatctgttaaatgatcctcgtggagcagctctagaggca
atagttagtagaatcaaaatgattagttgcagtcctcaaatgggaaaaagtccattggcc
catgtgcgtttcctagctgtttctgcaacaatccccaatattgatgaccttgctgaatgg
cttatggttcctatccaaggaattaaaaggtttggtgaggaaatgaggcctgtaaagttg
actaccaaagttttcggctatgctccagccaaaaatgactttctgtttgagaagcggctt
caaaattacatatttgatctccttatgcaatattctagtggaaagtctgcactagtgttt
tgctctactagaaagggggcacaagaagcagcacaacggctgtcccagacagtaatgacc
catggttattcaaaccccttcatcaaaagcagggatcagcaggaaaggttgaaggaagct
tcactttcatgtggtgacaaacagatgcaatcttacatcctttatggtgttggttatcac
aatggtggactttccccaaaggatcgtaatctgattgaaggcctctttctcaatggtgat
cttcaagttctatgcaccacaaacacccttgcccatggaattaacctcccagcacatatg
gttataatcaaatcaacacagcacttcaacaaggagaaagggatttacatggaatatgat
agatcaatgatattgcagatgtgtgggagggcaggccgcccaccatttgatgatactgga
atggtcataatcatgacaagaagagaaactgttcatttgtatgagaacctactaggtgga
tgcgaattggttgaatctcaattactttcttgtgttactgagcatctagctgcagaggta
gttcagttgactgtcccagatataacaagggcaatagaatggatgaaatgctcatatttg
tatgtgagaatgaaaaagaaccctcaaaattatgctgtaaagaaaggattatctaatacc
catgtagagaagcatatacaagaggtctgtgttcagaaagttaacgagttagcacactac
caaatgatctggaccgacgaagatggttttcttttgaagcctcttgaacctggaaggttg
atgacaaagtattatttgaaatttgacaccatgaaacacatcatgaaagctccttcaagt
tgcagcatagaagatgcacttcatattgtttgccgagcagaggaaatttcatggatacaa
ctgaggcggaacgagaagaagctcctaaatgacataaataccgataaagatggtaggctt
cgttttcacatccttggagataaagggaagaagaaaaggcgcatacaaaccagagaagag
aagttgtttattttggcaaatgattgcttgactggagatcctttagcccatgatttgtct
cttacccaggacatgaactctgtttgttcaaatgggtgtcgaattgcgaaatgcatgaaa
gagtattttatatataaaatgaattataaaggagctttgaattcaatccttctagcgaaa
tctttacatcaaaagctctgggaagacagtccgtatctgctgaaacaattgcctggcatc
ggtatggtgactgcaaaggccttacaatctatgggagtgaagtcatttgagaccctttct
gaagcagacccaagaaaaatagagatggttactggtcgaaagttcccatttggtaaccat
atcaaggaatcattgctttcacttccaccaaaagttgatatgaaggttgaggagatttca
tgtccaaattatgggaagtccaagctggttatgacattaacgagactgtcacaatcgcca
caagcaactaaacgacattatgcggatatggttgttgccacagaggaagataacatgata
gttttccatgagaaaataagagtggaagaatttacaagcccttatagtgcaacaatatta
gttacaagccctctacaaggaaagctaactgttaaggcagatctaattttcgaagaattc
attggtattgacatacacgagaaggttatactcatgaaggatatcaactcccatatctat
catgatcatggaatgaagaaactctccttgcctcagccaagcaatgtgtacatagttgat
cctgacaatgatcatctacctcaatccccaactcgcaagcctcagaagtcgttaaaatcc
aaaactgaagaagcttccatgcccagtttcaaactattggatgaagattcagatgaaggt
gagcgtgttgtcgagaacaatgatgatgattgcaaaatcattaccgagataaccgttttt
gatcacatacgtgaaaaggccaagagcttacctttcttggcagccacaccaagtactgaa
catccgccatccctggagacgttaagcctgatccgaaagcgtacccacaaccgacagctt
gtactcaacgaacttctagaaagttccaataattcaagcgaagaatcaagcgagccagat
ggaggaaccagcactcgatccaacatgctaactggagacacaatattcgagcatataaga
aagaaatccaaatgcttccctcgagtcgatgaaatcaagagcttaactaccaaatcatcc
attcctgactttgactttgactttgacttatctgcaggtgcagagtcaaatgatcaagtt
cacaaaggaactttaactattttagatttagaagctgtgaaacctaaaggcaaagcaaat
aatgaagaaaagtctccaggtttagcaaagaggcaaagctgttcattggcaacagcaggt
gaaacagatccatttctcggtttcaagagtgtgttttcgtttctttaa
DBGET
integrated database retrieval system
