KEGG   Cynara cardunculus var. scolymus (artichoke): 112526533
Entry
112526533         CDS       T05604                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112526533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccav03019]
    112526533
   03041 Spliceosome [BR:ccav03041]
    112526533
Messenger RNA biogenesis [BR:ccav03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112526533
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112526533
Spliceosome [BR:ccav03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    112526533
SSDB
Motif
Pfam: RRM_1 RRM_7 AbiGi
Other DBs
NCBI-GeneID: 112526533
NCBI-ProteinID: XP_024992622
LinkDB
Position
LG_14
AA seq 426 aa
MDLSKKRKMEENGGQFTTDVTNDVVAPPPSYSFPSLTPQDARKILEPFTKEQLLDVLQTV
VVRDIAVLDAVRSVVDSDPTQRKLFIRGIGWETTTDKLRSIFSAFGELEEAIVITDKTTG
KSKGYGFVTFRHIDGAVMALKQPSKKIDGRITVAQLAAARDLANVDVSTRKIYVGNVPFE
ISSDRLLSHFSSYGEIEEGPLGFDKQSGKQKGFAFFVYKTEEGARNSLVDPIKNIDGHQV
MCKMATDGKKGKAGGPQGPTGMPGDAAPPHGSMPGSMNAGYGMPGGITSYGGFSGGPPLP
SHQNPQLNSSVPSAIGSGHGYGNQGPPSFGGGGGGSGYGGGGYGSGGYGSGGYGGGSHYG
GGGAAPDHPGPNSFASSINRMPPTQGGYPDGGNYGMSSAYPTQPNLPPAGPRGPHGGMYQ
GGTPYY
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggatctttccaagaagagaaaaatggaggagaacggtggccaattcaccaccgatgtt
actaacgacgtcgttgctccaccaccgtcatactcctttccaagtcttactccacaggat
gcgcgcaaaatacttgaaccgttcaccaaagagcagctactcgacgtcctacaaaccgta
gtcgtccgagacatcgctgttctggacgccgttcgatcggtcgtagactccgatcctacc
caacgcaaacttttcatccgcggtatcggctgggaaacaaccacggataagcttcgatct
atcttttcagcttttggggaactcgaagaggctattgtgataactgataaaactactgga
aaatctaaaggttatggatttgttacttttaggcatatagacggggcggttatggctttg
aaacaacctagcaagaagatcgatggtagaattacggttgcgcagttagcggcggccagg
gatttagctaatgttgatgtgtcgacgaggaagatttacgtcggaaatgttccgtttgag
atatcatcggatagacttttgagtcacttttcatcgtatggggagatagaagaagggccg
ttagggtttgataaacagtcagggaaacaaaaggggtttgcttttttcgtttataaaact
gaggaaggggcgagaaattcacttgttgatccaattaagaacattgatgggcaccaggtt
atgtgtaaaatggctactgatgggaagaaggggaaagcaggtgggccacaaggacctact
gggatgcctggtgatgccgctccaccccatggatcaatgccagggtccatgaatgcgggg
tatggtatgccaggtgggataacatcgtatggagggttctctggtgggcctcctttgcct
tctcatcaaaatccacaactaaattcttcagtgccttcagcaattggcagtggtcatggt
tatggaaatcagggaccaccctcatttggtggtggtggtgggggaagtgggtatggcggt
ggtgggtatggtagtggcggatatggcagtggtggatatggtggtggctcacattatggt
ggagggggtgcagccccagatcatccggggccgaacagttttgcatcttcaattaacaga
atgccaccaactcagggaggataccctgatggtggaaattatggtatgtcttcagcttat
ccaacacaaccgaacctcccaccagcgggtcctagaggccctcatggtgggatgtaccag
ggcgggactccttattattga

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