Cynara cardunculus var. scolymus (artichoke): 112526649
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Entry
112526649 CDS
T05604
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112526649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112526649
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112526649
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
LRR_4
F-box_5
LRR_6
LRR_At5g56370
DUF7885
LRR_8
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
112526649
NCBI-ProteinID:
XP_024992791
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Position
LG_14
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AA seq
571 aa
AA seq
DB search
MDPDLTKPWALPEEFLKRTFALINSDKDRNSASLVCKDWYNAERFSRRHVSIRNCYSVSP
EIVAARFPGIRSVTLKGKPRFSDFNLVPEDWGADVQSWLSVFAAAYPFLEELRLKRMAVS
DESLEYLAMNFHGFKALSLLSCDGFSTIGLEAIVTHCKNLTELDLQENGIDDLGGDWLSY
VPENLTSLEVLNFAALDSEVSFDALESLVSRCKSLRVLKVNRKISLDQLRRLIELAPKLT
ELGTGSFAEDLVSSSVTELESAFSKCRDLHTLSGFWDVTLLYLPVIFPVCGNLTFLNLSY
ATLGAIELECILTRCKSLRRLWVLDTVGDEGLEMVGSCCPLLEELRVFPADPFNQELGVT
ESGFLSVSNGCPNLHYVLYFCQRMTNAAVATVAQNCPNFTHFRLCIMSPGEPDYLTNEPM
DEAFGAIVKTCPNLRRLSVSGRLTDLAFEYIGNHAKNLETFSVAFAGTSDLGMEYVMRGC
PKLRRVEIRDCPFGDNALLSGLAQYESMRSLWMSACNVTTDGCKKLADEMPRLNVEVIKD
DGGEDGSADKVYIYRTVAGPRTDAPPFVVTL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggatccagatctgaccaaaccatgggcgttgccggaagaatttctgaaacgaacattt
gcgttgatcaactccgataaggatcggaactcggcgtcactcgtttgcaaagactggtac
aacgccgagcggtttagccgccgccacgtctccatcagaaactgctactccgtttcaccg
gaaattgtagctgcgaggtttccggggatccggagcgttacactgaaggggaagcctcgg
ttttccgatttcaatttggtgccggaggattggggagccgatgttcaatcatggctgagt
gttttcgcggcggcgtatccttttctggaggagctgcggctgaagagaatggcggtttcc
gatgagagtttggagtatttagctatgaattttcacggttttaaagctttgtcgttattg
agctgtgatggtttcagtactattgggttggaagccattgttactcattgcaaaaacttg
acggaattagacctacaagagaatgggatcgacgatcttggtggagattggttgagttac
gtcccggaaaacctaacctcgttagaagttctcaatttcgcagctctggatagcgaagtc
agcttcgatgcgttggagagtctcgtttctcgatgcaaatcgttacgggttctaaaagtt
aaccgaaagataagtttggatcaattgcgaaggcttatcgagcttgctccaaagttaacg
gagctcggtaccggttcattcgcggaagacctcgtgtcgagttccgtcaccgagctcgaa
agtgcattcagcaaatgtcgagatttgcatacgctttccggtttttgggacgttactttg
ctttatctacccgttatatttcccgtttgcggtaatttgacgtttttgaatctgagttac
gcgactctcggggctattgaactcgagtgcattcttactcgttgcaaaagcctacgtcgc
ctttgggttcttgatacggtaggcgacgagggtttagaaatggttggatcgtgctgcccg
ttgctagaagaactccgagtcttcccagccgatccatttaaccaagaactcggtgtgacg
gagtcgggtttcctgtctgtatctaacggctgtccgaacctacattacgtgctctacttt
tgccaacggatgacaaatgctgcagtcgccaccgttgcccaaaactgcccgaatttcact
cacttccgtctttgcataatgagtcccggagaaccagactacctaactaacgagcccatg
gatgaggccttcggtgcgatcgtcaagacatgtcccaaccttcgacggctctccgtttcc
ggccggttaaccgacctcgctttcgaatacatcggaaatcacgcgaaaaacctcgagacg
ttttcggtggcgtttgcaggcactagtgatttggggatggagtatgtgatgagaggctgc
ccgaaactgaggagggtcgagatacgagactgcccgtttggagacaatgcgttgctttcg
ggtttggcccaatacgagtcgatgcggtcgttgtggatgtcggcttgtaatgtgacgacc
gacggttgtaagaagttggccgacgagatgccgagattgaacgttgaggtgatcaaagat
gacggtggtgaagatggcagtgccgataaggtttatatctatcgaaccgttgctggacca
agaaccgatgctcctccgtttgttgtgacactttga
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