Cynara cardunculus var. scolymus (artichoke): 112526982
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Entry
112526982 CDS
T05604
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112526982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112526982
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112526982
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
Motif
Other DBs
NCBI-GeneID:
112526982
NCBI-ProteinID:
XP_024993213
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Position
LG 14:14149329..14153709
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AA seq
633 aa
AA seq
DB search
MEWEADDRKAVVVGLIEKATNSIKPDLDPRILKSIKSVVRHSDSELRLAAENLMSLMKRD
HSQVRYLTLAIIHELFMRSKLFRALIVENLDQLLTLSVGFRRNQPLPAPPAIASKLRSKA
IEFLERWNSTFGIHYRQLRLGHDYLKNTLRFQFPNLQANAARVQQERRERELRTKEILLK
KYELLKSNFSSIKDEVNSIVDEISECLDILITSKEDNLPLDPIDEEDVDEFRGVELRRIR
DNSLKEADKVQENSENKVVFDALRELYKLLVTKHIVAVQESVSVLVRVELSDNRLRDSML
KEFIDIRNHLKSIKKKCEEAGCALTNPADEGEEDIWEEGASESFDISTSSTPNKQSEDHA
NKRNDSPECSNSKTINVIGKVEDPEVCGTDLNPLKSKLMVEAPVMKWGSFLDNWGSNRDF
MANQRGLELDGHWGRVDHDATIPANKIAELNVQAVVYEEEHKEIQQCGAPLKKGGFCQRK
DLKVCPFHGPIVARDDEGTPNDAVSMDDEKPDLKLFSMDELLKQAVNNVREMDKEAMKKR
EYDKKELKRAKLAKVRGHNEAVLRDAALASTSGSSSIGDLEGREKDSLAKMLKKRTTAKD
RLARRLLSRKATAKELNLGEDHSKYREAFPNQW
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaatgggaggcggatgatcggaaagcggtggtggtagggttgatagagaaggctacc
aattcaattaaaccagacttggatccgagaatcctcaaatcaatcaaatcggttgtccgc
cactctgattcagagctgcggctcgcggccgaaaacctaatgagcctcatgaaacgagac
cactctcaggtacggtaccttacactagctataatccatgaactgttcatgcggtcaaag
cttttccgagcccttattgttgagaatttggaccaattgttgactttaagtgttgggttc
cgaagaaaccagcctcttcctgctcctccagccattgcatccaagttgcgttcaaaagca
atagaattcttagagagatggaactctacatttggaatccactacaggcagcttagatta
gggcatgattacctgaaaaatacccttagatttcagtttcctaatcttcaagcaaatgca
gcaagagttcagcaggagagaagagaaagagagttgcggacgaaagagattctgttaaag
aaatatgaacttttgaagtcaaatttttcttcaatcaaggatgaagtaaattcaatagtt
gatgaaattagtgaatgcttagatatccttataacttctaaagaagataacctgccactg
gatcctattgatgaagaagatgttgatgaatttcgtggcgttgaattgcgtcggattcgt
gacaattcattgaaagaagcagacaaggtacaagaaaatagcgaaaataaagtggttttc
gatgcattaagagaactttacaagcttttagtgaccaaacatatagttgccgtgcaagaa
tcggtttctgttcttgtaagggttgaattgtctgataataggcttagagactccatgtta
aaggaattcattgacattcgaaatcatctcaaatcgataaaaaagaagtgcgaagaagca
gggtgtgctcttacgaaccctgcagacgaaggggaagaagatatttgggaagagggcgca
agtgaatcgtttgatatttcaacatcttcgacgccaaataagcagagcgaagatcatgca
aataagagaaacgattctcctgaatgcagtaatagtaaaacgataaatgttattgggaag
gtggaagatcctgaagtttgtggaaccgatttgaatcccttaaagagtaagcttatggtt
gaagctccggttatgaaatggggttcgtttttagacaactggggttcaaatcgtgatttt
atggctaaccaaagagggttagagcttgatggtcactggggtagggtagaccatgatgca
accattccggctaataaaattgctgaactaaatgttcaagcggtcgtatatgaggaagag
cataaagaaattcagcaatgtggtgcacccttgaaaaagggagggttttgtcagagaaaa
gatttgaaagtttgcccttttcacggccccattgttgctcgagatgatgaaggaactcca
aatgatgcggtttccatggatgatgaaaaacccgatctgaagcttttctcgatggacgaa
ttactgaaacaggcagtaaataatgtccgagagatggataaagaggccatgaaaaaaaga
gaatacgataaaaaggaattaaaacgagccaaacttgcaaaagtccgtgggcacaatgaa
gctgtgttacgagatgcagcacttgcttcaacttcagggtcttcttccattggagatttg
gagggcagagaaaaagatagtcttgcaaagatgctgaaaaagagaacaactgcaaaagat
agattagctcgaaggctactaagtcggaaagctactgcaaaagagctgaatcttggagag
gatcattcaaaatacagagaagccttccctaatcaatggtag
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