Cynara cardunculus var. scolymus (artichoke): 112527123
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Entry
112527123 CDS
T05604
Name
(RefSeq) AP-4 complex subunit epsilon-like isoform X1
KO
K12400
AP-4 complex subunit epsilon-1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112527123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112527123
Membrane trafficking [BR:
ccav04131
]
Endosome - Golgi transport
Others
AP-4 complex
112527123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
INTS1_R4
HEAT_2
HEAT
Cnd1
HEAT_EZ
PDS5
Cnd3
NPHI_C
Exportin-T
DUF4290
Motif
Other DBs
NCBI-GeneID:
112527123
NCBI-ProteinID:
XP_024993319
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Position
LG 15:20366626..20379362
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AA seq
950 aa
AA seq
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MGSQGGFGQSKEFLDLVKSIGESRSKAEEDRIVLREIETLRRRITEPDIPKRKMKEYIIR
LVYIEMLGHDASFGYIHAVKMTHDDSLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK
SDNFLVVCAALNAVCKLINDETIPAVLQQVVELLYHPKEAVRKKAVMALHRFYQRSPSSV
THLVTNFRKKLCDNDPGVMGATLCPLFDLIMIDVNSHKDLVGSFVSILKQVAERRLPKSY
DYHQTPAPFIQIKLLKILALLGSGDKQSSEQMYTIIGDIMRRSDTTSNIGNAILYECICC
VSSIHPSPKLFGAAADAIAKLLKSDVHNLRYMGIDALGRLIRINPEVAEQHQLAVIDCLE
DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIEYMISINDNHYKTEIASRCVELAEQFAPS
NRWFIQTMNKVFQHAGDLVNPKVAHNLMRLIAEGFGEDDDTADSQLRSSAVESYLRIMGE
PKLPSTFLQVNCPTLVSYAWSSPSICMCGMLLCFCCIQVICWVLGEYGTADGKYSASYIG
GKLCDVAEAHSSDDTVKAYAVTALMKVCSYEKAAGRKLDMLSECQSLIESLSASHSTDLQ
QRAYELKAIISLDGIAMENIMPLDASCEDIEIDKSLSFLNSYVQKSLEEGAKPYLTEHER
SRTRNISNFRNHDHHDASTHSLRFEAYEVPKPVISARLPPTASLTELAAVREQSYQREVH
RSPSVGSLSDKGSQELRLRLDGVQKKWGRPTYSSAASPSTSDSESHTVNGTGKGKSFEPS
SRRQPEVEIPEEKQKLAASLFGGTTSKSEKKQSGGGIKGSKATRSTADQTRATTAVVHPP
VDLLDFGEPSGAASGSSSTVDPFKQLEGLVDTNQYSNVSKDPDLLSLYSDAASTSGQNQN
QETGNLSHGSGNRTTKGPNLKDALGKDALVRQMGVTPATQNPNLFKDLLG
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggctcccagggtggcttcggccagtccaaggagtttctggaccttgtaaaatcaatt
ggagaatcccgatccaaggctgaggaagaccgtatagttcttcgtgagatcgaaacccta
agacgccgaatcaccgagcccgatatccccaaacggaagatgaaagagtacataatccgt
ctcgtgtacattgagatgctcggccacgacgcctcttttggatacattcatgccgttaag
atgactcatgacgattccctcctactgaagcgaactgggtatttggccgtgactctgttt
cttaacgaggatcatgatttgataatattgatcgtgaatacgatccagaaggacttgaaa
tcggataattttctggtggtatgcgccgctttgaatgcggtatgtaaattgattaatgac
gagacgatacccgctgttcttcagcaggtggttgagttgttataccacccaaaagaggcg
gtgaggaagaaggctgtaatggctctgcatcggttttatcaaaggtccccctcgtccgtg
actcatcttgtaacgaatttccgaaagaaactttgtgacaacgaccctggagtaatgggt
gctacactttgccctctatttgatcttatcatgatagacgtaaattcacataaagattta
gttggaagctttgtaagcattctcaaacaggtcgctgaacgtagactgccaaagagttac
gactatcatcagacacctgccccgtttatacagattaagttgctaaaaattctggcatta
cttggtagtggtgacaagcagtccagcgagcagatgtatactatcattggagacataatg
aggaggagtgacacgactagtaatataggaaatgcgattctttatgaatgcatatgctgt
gtctcatctatacatcccagtcctaagttatttggagcagcagctgatgccattgctaaa
ctcctgaagagcgacgttcataatttaaggtatatgggtattgatgcacttggtcgactg
ataaggattaacccagaagttgctgagcaacaccaacttgctgtaattgattgcttagag
gatccagatgacactctaaagaggaaaacgtttgagctgctttataaaatgacgaagtcc
tccaatgtggaagttatagtagaccgtatgatagagtacatgataagcatcaatgacaat
cattacaaaactgaaatagcatctagatgtgtggagcttgcagagcaattcgcacccagc
aaccgttggtttattcagactatgaacaaagtcttccaacatgctggggatttggtgaac
cctaaggtggctcataacttgatgcgcttgattgccgagggatttggggaggatgatgat
acggcagatagtcagcttagatcttctgctgtggaatcttatttgcgaataatgggagag
ccaaagcttccatctacatttcttcaggtaaattgtcctactttggtttcctatgcctgg
tcttcacccagcatttgtatgtgtggaatgttgctctgtttttgttgtatacaggtcata
tgttgggttttgggggaatatggaactgcagatggtaaatattctgcctcctacatcggt
ggcaagttatgtgatgttgcagaagcacattcaagtgatgatactgtcaaggcgtatgca
gtgactgcacttatgaaagtttgttcttatgaaaaagctgccggaagaaaattagatatg
ttatcggagtgccaatccttgattgaatcattgtctgcatctcactcgactgatctccag
cagcgcgcatatgaacttaaggcaattatcagcctagatggtattgctatggagaatata
atgccattagatgcaagttgtgaagacattgagattgataagagtctttcgtttctcaat
agttatgttcagaagtctttagaagagggggctaaaccatatttaacagagcatgaacga
tctagaactcgaaatatcagcaactttagaaaccacgatcaccatgatgcgtcgacacat
tctcttaggttcgaggcttacgaggttccaaagcctgtaatctctgcaaggctaccccca
acagcttctttaaccgaacttgcagctgtccgtgaacaatcttatcagagggaggtccat
cgtagcccatctgttggatctttatccgacaaaggctcgcaagagctcaggctacgtctc
gatggggttcaaaagaagtggggtaggcccacttactcatctgctgcctccccatcaacc
tcagattcggaatctcatacggtaaatggtactggaaaaggcaaatcatttgaaccctct
tcaagaaggcagccggaagttgagatacctgaagaaaagcaaaaacttgcagcttcactg
tttgggggtaccacttcaaagtctgaaaagaaacaatctggtggtggtatcaagggttca
aaagcaacccgtagtacagcagatcaaacgcgagccacgacagcagtggttcatccacct
gtggacttgctggatttcggagaaccaagtggtgcggcaagtggctcatcctcaaccgtg
gatccattcaaacaactggaaggtcttgtggatacaaaccaatatagtaatgtttccaaa
gatcctgatctattgtccctttattcagatgctgcttctactagcggtcagaatcagaat
caagaaactggtaacctgagtcatgggtcgggtaacagaacgacaaagggtccgaacctt
aaagatgctttggggaaagatgcattggttaggcaaatgggtgtcacaccagcaacccag
aatcctaatttattcaaagatttgcttggctga
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