Cynara cardunculus var. scolymus (artichoke): 112527209
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Entry
112527209 CDS
T05604
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112527209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112527209
03012 Translation factors [BR:
ccav03012
]
112527209
Enzymes [BR:
ccav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112527209
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112527209
Translation factors [BR:
ccav03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112527209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
R3H
HA2_C
OB_NTP_bind
Ank_2
HA2_N
Ank
nSTAND3
Ank_5
Ank_3
ATPase
AAA_22
AAA_19
Ank_4
AAA_16
AAA_25
PhoH
AAA_7
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112527209
NCBI-ProteinID:
XP_024993448
LinkDB
All DBs
Position
LG 15:12055758..12069333
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AA seq
1221 aa
AA seq
DB search
MPNPSTTKRRKRGGGRGQTPQQQQRQQQRLQQKLLQKQQPPRVTEESRIHIRQTLAQFQA
SNDEMYKFDASLTNFERAEVHKLCVKMGLKSKSQGPKEPNKRCVTVYKCMEKLKKIKEKS
DLTSFTFSEKGKEVLNDYFSVYPPGDQGEGEKIMAMSSKNTDKIRTKTNDILWKPLMKKA
DIAKKLESLAARMESDIKLKQITEGRSKLPIASFKDVITSTIESHQVVLISGETGCGKTT
QVPQYMLDYMWSKGDACKVICTQPRRISAISVAERISFERGENIGESVGYKIRLETKGGK
NSSIVFCTTGVLLRVLVKAGNGRSRREATTKMFKDAFPDITHIIVDEIHERDRFTDFLLA
ILRDMLPSYPHLRVVLMSATLDAERISQYFGGCPIIRVPGFTYNVKRFYLEDVLLLVKST
KACHLDCTSKTSMDENSQLTEDFRLALEEAINLAWSSDEMESLLEFFANSEGLDVLNFQH
SVTGITPLMVFARKGRVGDMCMLLSFGANCHLQDNEGKTALSWAAHENQKEAAEILRKHL
DSTLVDPREEQLLLDKYLHNVNPELTDVILIEQLLRKICTESEEGAILVFLPGWDDINKA
RDKLSSSTLFKDSSKFLILALHSMVPSIEQKKVFKRPPQGCRKIILSTNIAETAVTIDDV
VFVIDSGRMKEKSYDPYNKVSTLQSSWISKASAKQREGRAGRCQSGICYHLYSKLRAASL
PEFQVPEIKRTPIEELCLQVKLLDPDSKIEDFLKKTLDPPVSEAIHNAITILQDIGALSP
NEDLTELGEKLGSIPVHPLTSKMLLFAISMDCLDPALTLACANDYRDPFTLPMLPGEKKK
ATAAKCELASLYGGHGDQFAIIAAFECWKNAKNRGQEGRFCRQYFVSPGVMNMLFGMRKQ
LENELYSNGFIPGNSSQLSANCQDVGIIHAVLVAGLYPLVGKLHLPKRNVRSIVIENANN
NMVRLHPQSVNSRLRFKKKDAIPLVIFDEITRGDGGLNIRSCSIIGPLPLLLLATEIAVA
PLDDDSVDDNDTNFEDSDEEEGNDEETGTHSGYKDRLMSSPDNVVKIVADRWLSFESTAL
DVAQIYCLRERLSAAIMFKITHPGKDLPELLAASIHAIANVLSYDGLAGIIMPLETVDSL
TSKVQETDIGQQGKVNGDSDNFLRSLLASNDSQPQFQNQRGWLKHHPSSSAQRNHHHNQN
AAAISRGPRGESLKRHRGYRA
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgccaaacccatcaaccacraaaaggcgcaagagaggaggtggaagagggcaaacaccg
cagcagcagcagaggcagcagcagaggctgcagcagaagctgctgcagaagcagcagccg
ccgagggttaccgaggaaagtcggattcatattcgacaaacacttgcacagtttcaggca
tccaatgatgagatgtacaaatttgatgccagccttacaaatttcgaacgtgctgaggtg
cacaaattgtgtgtaaaaatgggtctgaaatcaaaaagtcaggggcctaaagaaccgaat
aaacggtgtgttacagtttacaagtgcatggagaagttgaagaagatcaaggaaaagtca
gatctcacttcttttacattttcagaaaagggaaaagaagttttaaatgactatttttct
gtttacccacctggtgatcaaggggagggtgaaaagatcatggccatgtctagtaaaaat
actgataagatacgaacaaagacaaatgatattctctggaaacctttgatgaaaaaggct
gatattgcaaagaagcttgaatcacttgctgcacggatggaatcggacatcaagttgaaa
cagattaccgaagggaggtccaaacttccgattgcctcttttaaggatgttattacatcg
acaatagaatctcatcaggtggttctcatatctggcgaaacagggtgtggaaaaaccaca
caggtgcctcaatatatgttggattatatgtggagtaaaggtgatgcgtgtaaagtaatc
tgcacccagcctcgacggatttctgcaatttcagttgctgaaagaatatcgtttgaaaga
ggtgaaaatatcggagagagtgttggatacaagataagattggagaccaaaggcggaaaa
aattcatcgattgtgttttgcacgactggggtcttgctgagggtcttggtaaaagctggc
aatggtaggtccagaagagaggccacgacaaagatgtttaaggatgcatttcctgacatc
actcacatcattgtggatgaaattcatgaaagggatcgattcactgattttctgctagca
atcctcagagatatgcttccgtcgtatcctcatctacgggtggtactgatgagtgctaca
cttgatgccgaacgaatttctcagtacttcggaggctgcccaattatacgtgtccctggg
ttcacttataatgtgaaaaggttctatttggaggatgtacttttgcttgtcaagtcaaca
aaagcgtgtcaccttgattgcacgtcaaaaactagcatggatgagaactcccagttaact
gaggacttcaggcttgctcttgaagaggctattaatctagcctggtcaagtgatgagatg
gaatctctcttggaattttttgcaaatagtgaaggattagatgttcttaattttcagcat
tctgtgacgggaattacaccattaatggtctttgctagaaagggaagagtgggtgatatg
tgcatgcttctctcttttggtgccaattgccatttacaagataatgaaggaaaaactgcg
ctttcctgggctgcacatgaaaaccagaaagaagctgccgagattttaagaaaacaccta
gattcaaccttagttgatcccagggaagaacaacttttacttgataaatacttgcataac
gtcaatccagaattaactgatgttatcctcatagagcaattattgaggaaaatatgtaca
gaatcggaagaaggagctattcttgtttttcttccagggtgggacgacataaataaagca
cgagacaaactaagttctagtactttattcaaagattcttcaaagtttttgatattagct
cttcattccatggtcccatctatagaacaaaagaaagttttcaaaaggccacctcagggt
tgccgtaaaattatactttccacaaacatagctgaaaccgctgtcacgattgatgatgtt
gtctttgtaatagatagtggaaggatgaaagaaaaaagttatgacccttacaacaaggtc
tcgactcttcaatcctcttggatctcaaaagcaagtgcaaagcagcgagagggacgagca
gggcgatgtcaatcaggaatatgttaccatctttattcaaaacttcgagcagcttcactc
ccagaatttcaagtgccagaaattaaaagaacgccaattgaagaactatgtttgcaggtg
aagcttcttgatcctgatagcaaaatagaagactttttaaagaaaacattagatcctcct
gtttctgaagccattcataatgcaattactattcttcaagatattggggccttgtcacct
aatgaggatctcacagagcttggggaaaagcttggttctatccctgttcatccactcaca
agcaagatgcttctctttgctatatcaatggattgtcttgaccctgctttgactttagct
tgtgccaatgactatagagaccccttcactcttccgatgttaccgggtgaaaaaaagaaa
gcaacagctgctaaatgtgagttggcctcattatatggtggccatggtgatcaatttgca
ataatcgcagcctttgagtgctggaaaaacgccaagaacaggggtcaagaaggaaggttt
tgtcgtcaatattttgtgtcaccaggggtcatgaatatgctattcggaatgcgtaaacaa
ctcgaaaatgaactttatagcaatggatttattccaggaaattcatctcagcttagtgca
aactgtcaagacgttggtataattcatgcagtccttgttgctggtttatatcctttggtg
ggaaagttacatctacctaaaagaaatgtaagaagtattgtgatagagaatgctaacaat
aatatggttcgattacaccctcaatctgtcaattctaggttacgattcaagaaaaaagat
gctattcctttggtcatatttgatgagataacacgtggagatggaggtttgaatattagg
agttgcagtattattggaccacttcctttattattgctagcaacagagattgctgtggct
cctcttgatgatgatagcgtagatgataatgatactaactttgaagatagtgatgaggaa
gaaggtaatgacgaggaaacagggacgcatagtggctacaaagatagactcatgtcttct
cctgataatgtagtcaagattgttgcagataggtggctttccttcgagtcaacagcactt
gatgttgctcagatttactgtttgagagaaaggttgtctgctgcaatcatgttcaagatc
acgcatccaggaaaagatcttcctgaacttcttgcagcctctatacatgcaatagccaat
gttctatcttatgatggacttgctgggatcattatgcccttggaaactgtggactcgctc
acatcgaaggtgcaagaaactgatattgggcagcaaggaaaagtgaacggggattcagat
aactttcttcgatcgctacttgcatcaaatgattcacaaccgcaatttcaaaatcagagg
gggtggttgaaacatcacccgtccagttcagctcaacgaaaccaccatcacaatcagaat
gccgccgcgatctctaggggtccaaggggagagtctctgaagcggcatcgtggatacaga
gcttga
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integrated database retrieval system
