KEGG   Cynara cardunculus var. scolymus (artichoke): 112527210
Entry
112527210         CDS       T05604                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112527210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ccav03041]
    112527210
Spliceosome [BR:ccav03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112527210
 Complex B
    112527210
 Complex C
   U2 SnRNP specific factors
    112527210
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 112527210
NCBI-ProteinID: XP_024993453
LinkDB
Position
LG 15:11683411..11686715
AA seq 808 aa
MLGSLPILPLPAPPTDGDLGPLPQSQVQNDPKDEHMQEAENDQNKSNSTPASIATHTRTI
GIIHPPPDIRTIVDKTASFVAKNGPEFEKRIIVSNAGNPKFNFLNASDPYHAYYQHRLSE
FRTQNQTPSLLPQQSDAPAPESTPSAAPADGNNATEKTDPSAKFRPIRKVLDPPEAEQFT
IRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSRENNNPQFHFLKPTHSMFMFFTSLA
DAYSKVLMPPKGLTDKLKKSVTDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERLLMS
MIDWHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKMSAVEEEEIVEPGKEVEMEMDEE
EVQLVQEGMRAASLDENSDDTKDVRVIPEENEPPMRIVKNWKRPEDRLPAERNPTKYVVS
PITGELIPVNEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPD
IFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTATQAMSQNAEDQIDGVNDGR
NLPGPAAPPPRPGVPSVRPLPPPPGLALNLPRVPPNAAQYSTVTSGGLPPPSRPPSMVTP
LRPPPPPMQINYGQQAYMMNRPPPPPMQQSMSVNPPSIPVPPPPGSQFTPLAPRPFAPLS
MPQHGMPMVPPPPMPQGMPPPPPPPEEAPPPLPEEPEPKKQRLDDSLLIPEEQFMAQHPG
PVRISVSVPNVDEGNLKGQVLEISVQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLK
DNLSLAYYNVGGGEMLSLSLRERGGRKR
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgttgggatcattgccaatattgcccctcccagcaccacccaccgatggggatctgggt
cctctgcctcaatctcaagtacagaatgaccccaaggatgagcatatgcaggaggctgag
aatgatcagaataagtcaaattccaccccggcttcaattgccacacacaccagaacaatt
ggtatcatacaccctccccctgacatcaggacgatagtggacaaaactgcaagttttgtg
gcaaagaatggacccgagtttgagaaaaggatcattgttagcaatgccggaaatcccaag
ttcaattttttgaatgcttcagatccctatcatgcctattaccagcatcgactgtctgag
ttccgtactcagaatcaaaccccatctcttttacctcagcaatctgatgcacctgctcct
gagtcaaccccttctgctgctcctgcagatggcaataatgcaactgagaagactgatccc
tcagcaaagtttagacccattcggaaagttctggatcccccagaggctgagcagttcaca
attcggcttccagagggtattacaggggaggagttggacattattaaacttaccgcacag
tttgtggcacggaatggcaagtcctttttaactggattaactagtagagagaataacaat
cctcaatttcactttttgaagcccacccacagtatgtttatgttcttcacatcactcgcg
gatgcctactctaaagtcttgatgccacctaaagggttgacagataagctgaaaaaaagc
gttactgatatgaccactgtacttgaacggtgtttgcacagactcgagtgggagcgttcc
caggagcaggcaaggcaaaaagccgaggatgagatagaacaggaaagactactcatgtct
atgattgattggcatgatttcgttgttgttgagaccatagattttgcagatgatgaagat
gaggatttacctcctccaatgactctagaggaggttattaggaggagcaagatgtcagct
gtggaggaggaagagattgttgaacctgggaaagaagtggaaatggaaatggatgaagaa
gaggtacaacttgttcaagaaggtatgcgggcggcaagtcttgatgaaaacagtgatgat
acaaaggatgtgagggtgattccggaggaaaacgaacctccaatgaggattgtgaagaac
tggaagaggcctgaggataggcttccggcagagagaaacccgactaaatatgttgtttcg
ccaatcacgggtgaacttattccggtcaacgagatgtctgagcatatgcgtatttctctt
attgatcccaagtacaaagaacaaaaggagagaatgtttgcaaagattagggagactacg
cttgcccaggatgacgaaatctccagaaatattgttggccttgcacggacccgtcctgat
atatttgggaccacagaggaagaggtttcgaatgcagttaaggcggaaatcgaaaagaag
aacgatgagcagccaaaacaggttatttgggatggacacactggtagtattggccgcact
gcaactcaagctatgtcccagaatgcagaggatcaaattgacggtgtaaatgatggaagg
aatcttcctggtcctgcagctcctcctcctagacctggtgttccatcagttcggccactt
cctccaccacctgggcttgccttgaatcttcctcgtgtgccgcctaatgccgcccaatac
tcgactgtaaccagtggtggtctgccacctccgtctaggccgccatcaatggttacacca
ctacgtccgccaccacccccgatgcaaataaattatggacaacaagcttacatgatgaat
cggccaccaccaccgccaatgcagcagtctatgtccgtcaacccacctagtattccggtg
ccgccaccaccaggatctcagttcacgccgcttgcaccccgtccttttgctcccctttcc
atgccccagcatggcatgccgatggttcctccaccacctatgcctcaaggaatgccgcca
ccaccaccaccaccagaggaagctcctcctccgcttcctgaagaacctgagccaaagaag
caaagactagatgattctttgcttatccccgaggagcagttcatggctcaacatccggga
cccgttcgtattagtgtatcggtgccaaatgttgatgaaggaaatctgaaagggcaagta
ttggagatcagtgttcagtcgttgtctgagacggttggcagtttaaaggagaagattgct
ggagagattcagctgcctgcaaacaaacagaaactgagtgggaaggctgggtttctcaag
gacaacttatctcttgcatattataatgttggtggaggcgaaatgctttctttgtctttg
agagaacgtggcggtaggaagaggtaa

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