Cynara cardunculus var. scolymus (artichoke): 112527238
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Entry
112527238 CDS
T05604
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030
DNA replication
ccav03420
Nucleotide excision repair
ccav03430
Mismatch repair
ccav03440
Homologous recombination
ccav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112527238
03420 Nucleotide excision repair
112527238
03430 Mismatch repair
112527238
03440 Homologous recombination
112527238
03460 Fanconi anemia pathway
112527238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccav03000
]
112527238
03032 DNA replication proteins [BR:
ccav03032
]
112527238
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112527238
Transcription factors [BR:
ccav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112527238
DNA replication proteins [BR:
ccav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112527238
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112527238
MMR (mismatch excision repair)
112527238
DSBR (double strand breaks repair)
HR (homologous recombination)
112527238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
zf-CCHC_4
zf-CCHC_5
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
112527238
NCBI-ProteinID:
XP_024993498
LinkDB
All DBs
Position
LG 15:complement(14795448..14800879)
Genome browser
AA seq
858 aa
AA seq
DB search
MAMKLTEGAISLLSTGRWDTPDVKPVLQVVDIRTVQTQTPPAGGVEKQERYRLLLSDGSF
HQQGMLATQRNDLVRSQQLQKGSIVQLTEFVCNTIRDRIIIIIINLDVILETCDLIGDSK
PCTLCPLKGPPTSVAAAPMQFQSINQPATSMGSPQTFMGGVSLAGSVPRPNLNASSSIFP
PQQEHSTGLNSYGNSTSNHPGSGRFNLAHAPPSMLPKPDSVTSTSRPPANSYVRPVQPTY
NQPPPMYMNRGPMAKNEAPPRIIPIAALNPYQGRWTIKARVTAKAELRRYNNAKGDGKVF
SFDLLDSDGGEIRTTCFNAVADEFYNQVEVGKVYYISKGSVKPAQKAFNHLKNDHEIMLD
STSTIQPCIDDDTSIPQQQFHFRSIAEIEGLDNNSILDIIGVVSSITPSSSIMRKNGTET
QKRTLQLKDMSGRSIEVTLWGNFCSTEGQTLQQMCDSGVFPVLAVKSARVSEFNGKSVGT
ISTSQLLIEPDFPEASKLKAWFDNVGRNTPSVSLSKDTIGRTDVRKTVSQIKDEKLGTSE
KPDWITVSATIWHMKVENFCYTACPLMIGDRQCNKKVTNNGDGKWRCDRCDQTVEQCDYR
YILQFQIQDHTGITWVTAFQESGEEIMGVSAKDLYCIKYEEQDDERFTETIRNVLCTKCN
FKLKVKEEIFSDEQRVKCTVVKAEKIKFSSDTSFFLDLLKKEEPNSLGPKMETPILGSNL
DPPNAGFKESAPFTNYMGSASGAALPASQMGHYVNPYGGSRLGTSCNSCGGIGHNSTNCP
SVVNAQGYTSGGRFNSMPSVPSGGGNAAVSGECYKCHQPGHWARDCPGVNNVSSGYGNGN
VASGNMGARLGNRSVGGY
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggctatgaaactgacggaaggcgcaatatcgctgttatccactgggagatgggatacg
ccggacgtgaaacctgtgcttcaagtggtggatattcggactgttcagacgcagactcct
ccagccggaggtgtagaaaaacaggagaggtaccggcttttgttatctgatggatcgttt
catcagcaagggatgcttgctactcagcgtaacgacttggttagatctcagcagttgcag
aagggctcaattgttcaattgaccgagttcgtctgtaatacgatccgtgaccgcatcatt
attataatcatcaaccttgatgtgattcttgaaacgtgtgatcttattggtgattcaaaa
ccatgcacactttgtcccctcaaggggcctcctacatcagtggctgcagcacctatgcag
ttccagtccatcaatcaaccagcaacaagtatgggtagtcctcaaaccttcatgggcggt
gtttcacttgctggctctgttccacgccctaatcttaatgccagctcttcaattttccct
cctcaacaggagcatagcacaggtttaaattcttacggcaactcaacgagtaaccatcct
ggttcaggacgatttaatttggcacatgcaccgccttctatgcttccaaaaccagattct
gttacttctacttcacgtccgcctgcaaacagttatgtgcgtccagtccaacctacatat
aatcaaccccctcctatgtatatgaacaggggacctatggcaaaaaatgaggcccctcct
aggattatccccattgctgctctgaacccatatcaaggtaggtggacaattaaagctagg
gtgactgcaaaagcagaacttagacgctataacaatgcaaagggagatggaaaagttttt
tcttttgaccttctcgattctgatggtggagaaataagaacaacatgcttcaatgctgtg
gctgatgaattttacaaccaagttgaggttggtaaagtttattatatttcaaaaggcagt
gtgaaacctgctcaaaaagcttttaatcacttgaagaacgaccatgaaattatgctggac
agtacgtcaacgatacagccttgcattgatgatgacacttcaattccacaacagcaattt
catttccgttccattgctgagattgaaggcttagataacaatagtattttggatatcatt
ggtgtagtttctagtatcaccccttcatcctccataatgaggaaaaacggtactgaaacc
caaaaaagaacccttcagctgaaggacatgtctggaagaagtatcgaggtaactttatgg
ggaaacttttgcagcacagaaggccagacactccaacagatgtgtgattctggagtattt
cctgttttggctgtgaagtctgctagagtgagcgagttcaatggtaagtccgtagggacc
atatccacaagccaattattaatagaacctgattttccagaggccagcaaactcaaagca
tggttcgataatgttgggaggaataccccttctgtttctctatccaaggatactattggc
cggacagatgtacgaaaaactgtatcccaaattaaagatgaaaagctagggacctctgag
aagccagactggatcacagtcagtgccaccatatggcatatgaaagttgaaaacttttgc
tacacagcatgccccctcatgataggtgatcgacaatgtaacaaaaaagttacaaataat
ggagatggaaaatggcgttgtgataggtgtgatcagactgtcgaacaatgtgattacaga
tatatcctgcagtttcaaatacaagaccatactggtataacatgggtaactgcatttcaa
gaaagcggcgaggagataatgggtgtttctgcaaaagatttgtattgcataaaatatgaa
gagcaagatgacgagagattcacagaaaccatacggaatgtcctctgtactaaatgtaat
ttcaagttaaaagtgaaggaagagatattcagcgacgaacagcgtgtgaagtgcactgtt
gtcaaagctgagaagataaaattttcatccgacacaagcttttttcttgatttgcttaaa
aaagaggaaccaaattctttgggcccaaagatggaaacccccattttaggttctaatctt
gatcccccaaatgctggatttaaagagtctgctccctttaccaattacatggggagtgct
agtggtgctgctttaccagcaagtcagatgggtcactatgtgaatccatatggaggttcc
aggcttggtactagctgcaacagctgtggtggcataggccataactctacaaactgtcca
agtgttgtaaatgcccaaggatacacctctggaggaagatttaacagtatgccttctgtg
ccttctggaggtggaaatgctgctgtatcaggtgagtgttataaatgccatcaacctgga
cattgggccagagactgtcctggtgtgaataatgtttcttcaggctatggtaatggaaat
gtggcttcaggaaatatgggagcacgtctgggtaataggtccgttggtggttattga
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integrated database retrieval system
