Cynara cardunculus var. scolymus (artichoke): 112527246
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Entry
112527246 CDS
T05604
Name
(RefSeq) nuclear poly(A) polymerase 3 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112527246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112527246
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
112527246
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
112527246
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
MTPAP-like_central
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
112527246
NCBI-ProteinID:
XP_024993506
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Position
LG_15
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AA seq
436 aa
AA seq
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MEFHLIMMQILMIWIKRVAYQRRLPLNQIKAASATLLLYGLYGLGVYNVESDIDVLCVAP
CFASMTEDFFIVLYNMLAGRPEVSVIHCVKDAKVPLLQFTFEGILIDLAFAKLPVTVVPE
NVDISNPSSIEDIDETSWKSLSGVWVKNSILQLVPDVKIFREQLCCVKSWAKRRGVYGDL
FGFFGDIHLAVLAAFICQKNPSASLVDLVSIFFKTFAFWPWPEPVVLQEGATLPPLPPGT
RTLMPIQLPSSPNEYCRSNMTTSTFNKIRAEFRRGYRQTQDALKPQFEWRNLFESFPYSK
SCLRFVKVCLSTYNKDELGMWVHWVKSRIRCLLLKLEELQALCDPNPTEYIDLSIPVPNV
VFYWGLVPGRGNNLNPNAAREEFMKNLSIGYQDAHIKAYLRLTNLKQMIPVYSKHSPSYV
VGYLATDGNHAIGWMD
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggaattccatttaataatgatgcagatactgatgatatggattaaaagagttgcttat
caacgtaggctgccgctaaatcagattaaagctgcttctgcaaccttattactgtatgga
ttgtatggtcttggtgtttataatgtggagtccgacatcgatgtactttgtgttgcccct
tgttttgcttctatgacagaggattttttcatagttttgtacaacatgcttgcagggaga
ccagaagtttctgttatccattgtgtcaaggatgcgaaggttcctttattgcagttcacg
tttgaaggaatcttgatcgacttagcttttgctaaacttccagttacagttgttcctgag
aatgtggacatatccaacccctcgtccattgaggatatcgatgaaacaagctggaagagt
ttgtctggagtgtgggttaagaatagcatcctgcagcttgttccagatgtgaagatattc
agggaacaattatgctgtgttaagtcatgggcaaagaggagaggggtgtatggtgactta
tttgggttctttggggacatacacttggctgttttagctgcttttatttgtcaaaagaac
ccaagtgccagtttggtcgatctggtttcaatcttctttaagacatttgccttttggcct
tggccagaaccagttgttctacaagaaggagcaacactgccacctcttccgcctggtaca
cgaactttgatgcctattcagttgccgagcagcccaaatgagtattgtcgttcaaacatg
actactagtaccttcaacaagatcagagctgaattccgtcgaggatatcgtcagactcag
gatgctttgaagccacaatttgagtggagaaacctcttcgagtcatttccttactcaaag
agttgccttcggtttgtaaaagtatgtctttcaacttataacaaggatgagcttgggatg
tgggtacactgggtaaaatcacgcatccgctgtcttctacttaagttggaggagttgcag
gccttatgtgatccaaaccctacagaatacattgacttgagcataccggtgccaaacgtt
gttttctactggggtttagttcccggaagggggaataatttgaacccaaacgccgcaaga
gaagagtttatgaagaatctgagtatcgggtatcaagatgctcatataaaagcatatctg
aggttgacaaaccttaagcaaatgataccggtctactcaaaacactcgccttcttacgta
gtcgggtatctggcgactgacggaaatcatgccattggttggatggattaa
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