Cynara cardunculus var. scolymus (artichoke): 112527248
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Entry
112527248 CDS
T05604
Name
(RefSeq) uncharacterized protein LOC112527248 isoform X1
KO
K19027
zinc finger FYVE domain-containing protein 26
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccav03400
]
112527248
DNA repair and recombination proteins [BR:
ccav03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112527248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
RNA_pol_Rpb2_7
TPR_1
Motif
Other DBs
NCBI-GeneID:
112527248
NCBI-ProteinID:
XP_024993508
LinkDB
All DBs
Position
LG 15:complement(14533932..14572562)
Genome browser
AA seq
2573 aa
AA seq
DB search
MAPRPQDTGMETDLLARLAANHLFLGQIEPFRATILALRSRDPDLARSILQTIVANGGRY
ETILFSSNSSPALLTYVCTLELLQFNDPTSLVWSFDSDTLRLRAEFLLYVQNIMSRVLEI
QKEKNNLGHNQMDIAHLDSIKRDEMGINDYGSQEKLKESSGDTGISEFDSKQHFSESKGD
TSEMGINTFDSGTGHLSEESVTSTKYWDLEECLKVLNKISEVGFKRLRPDLVELDVRESE
EEGTSGGSLEMEESEMMGLRGVILENAVIFEALCENIAKQVKRVQENDGGDDSGLAISLT
VQEEDAKALKLIQRCVQMVHLDVMKECLKEGDHNGAVSHIQFLRLDHGVEEADYRMVLQD
LVKRGLVGMVAYDDTWLAMRSKLLSIYEKALSSNSTRLVHMIQSIQEELLSEEIEMHKVL
NGNQVPPPLAQLLNFIAQMTPETQGSHTSSIKLVISACMRDMYHYARISGLHVLECVMDV
ALSAVKREQLQEASNILLLYPRLQPLVAVMGWDLLSGKTDMRRKLMQLFWTSKSQILRLE
ESSLYDKSNEVSAVEHLCDFLSYQLDLASFVACVNSGQSWSLKSSLLLSGKGHTELVNED
FQLDPFVENLVLERLSIHSPLRVLFDVVPDIRFQEAIELFSMQPITSNLAAWKRMKDVEL
MHMRYAMESAVFALGAMGNSKNNEVKSYQMALCYLKDLSIHLEAINNIPRKIMMVNIVIS
LLHMDDLSCDLSPCPPPRRQPDTSNTYSGESADPCTNEEGNTMVVSFTGRLLNILRQNLP
AAVTEEEIAVDGNVPTDGRRALEWRISKARSFIEDWEWRLSILQSLLPLSDRQWKWEEAS
TILRAAPSKLLNLCMQRAKYDIGEEAVNRFSLPPEDKATLELAEWVDGAFKRASAADAVS
RAADGTSVVQELDFSTLRSQLGPLVATLLCIDVAAASSRSSTLSHKLLDQAQVMLSEIYP
GRAPKIGATYWDQIYEIGIISVAKRLLKRLQELLEQDKFPVLQALLTGDLINTSSKDFQR
QGHRERALAMLHQMIEDAYMGKRQFLSGKLHNLARAIADEENEREYMRAESSYPDKDALI
HDKGGVLGLGLRPMRQTLSVPSTGEKSMASTSYDVKDAEKRIYGPLTSKATTYLSQFILH
IAAVGDIVDGTDTTHDFNYFSLIYEWPKDLLTRLVFDRGSTDAAAKVAEIMSADFVHEVI
SACVPPIYPPRSGHGWADIAVIPTCPKSSSECKLLSPSSREAKPSSYCPSSATPGVPLYP
LQLDVVKHLVKLSPVRAVLACVFGNCILYGGSDSTISSSLNDVSVQKHDADRLFYEFALD
QSERFPTLNRWIQMQTNLHRVSEVAVTAENMISDGSDKPEAKTSVKRFREHDSDSDLEHD
DLAVGTSIPVLSETTNETGIWQDSPKSETAEIDTTVFLSFGWENEKPYEKAVDRLIDEGK
LMDALALSDRCLRDGASDYLLKLLIEREEENHTVFNRSGHSSFRIPSNSWKYCLRLKDKQ
LAATLVLKYLHRWELDAALDVLTMCHCHLGENDPSKKEVVLRRQALMRYSHILSADERYN
SWQEVEAECKEDPEGLALRLAEKGAVSAALEVAESAGLSIELRRELQGRQLVKLLTADPI
NGGGPAEASRFLSSLRDSEDALPVAMGAMQQLPNLRSKQLLVHFFLKRRDSNLNEPELSR
LNLWALGLRVLAVLPLPWQQRCSSLHEHPQLIVEVLLMRKQLQSASLILKEFPSLRDNNK
ILTYAAKAISVTISPPRRESRIQVSGPKTKQKSGTPTRSSFSNSLSNLQKEARRAFSWNP
RNSAEKAAPKDVQRKRKGSGLPQSEKATWEAMAGIQEDRVSSYSMDGQERIPSVSIAEQW
MLTGDPYKDEAVRSSHHYESAPDIILFKELLSLCADESSSAKGALDLCVNQMRAVLSSQQ
LPENASMEIIGRAYHATETFVQGLLYAKSQLRKLSGGNELSSYSERSKDVEDTFSDAGSS
TMGNQSTDEVSEVLSQADIWLRRAELLQSLLGYGIAASLDDIADKESSARLRDRLILEER
YSMAVYTCKKCKIDAFAVWNAWGLALIRMEHYAQARVKFKQALQLYKDDPAPVIQDIINT
IEGGPPADVSLVRSMYEHLAKSAPAILDDSLSADSYLNVLYMPSTFPRSERSRSGQEASN
DNSSNSLEFEDVPRSNLDSIRYLECVNYLQEFTRQNLLDFMFKHGHYKDACMLFFPENAV
PSPPQPSSLAVMSSSPQQKPDPLSTDYGSVDDLCDLCIGFGAMHVLEEVMSSRMSSTATV
DVEVKQHTAAALNRICVFCETHKHFNYLYRFQVIGNDHVAAGLCCIQLFVNSSVLDESIK
HLENAKMHFDEALSARYKSGGSTKLVTKGVRGKSASQKLTEEGLVKFSARVAMQVDVIRS
FNDTDGPQWKYSLFGNPNDPETFRRRCEIAETLVEKNFDLAFQVIYEFNLSAVDIYAGVA
SSLADRKKGGQLTDFFRNIKGTIDDEDWDQVLGAAINVYANKHKERPDRLIDMLTSSHRK
VLACVVCGRLKSAFQIASRSGSVADVQYVAHQALHANALPVLDMCKQWLAQYM
NT seq
7722 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgcgaccgcaagatacaggcatggagacagacctgttggctcgtcttgcagca
aaccatttgttcttgggtcaaatcgaaccttttcgagctaccatcctcgctctccgatct
cgagaccccgacctagcccgttctatcctccaaacaattgtagcgaatggtggccgttac
gagactattctttttagttccaactcttcccctgctcttcttacttatgtatgtaccctt
gaactcctccaatttaatgatcctacgtcgctggtttggagctttgactcggatacgttg
cgtttgcgtgctgaattcttgctttatgttcagaatattatgtctagggttttggaaatt
cagaaagaaaagaataatttaggtcacaatcaaatggatattgctcatcttgattcaatt
aaaagggatgaaatgggtattaatgattatggttcacaagagaagcttaaggagtcgagc
ggggatacgggtattagcgaatttgattcgaaacagcactttagcgagtcaaaaggggat
accagcgaaatgggtattaatacttttgattcggggactgggcacttaagtgaagaaagt
gttactagtactaagtattgggatcttgaggagtgtttgaaagttctgaataagatttca
gaggtggggtttaagaggttgaggccagatttagttgaattggacgtcagagagagtgaa
gaagaagggacttctggtggctctctagagatggaagaaagtgaaatgatgggtttgaga
ggagtaattttggaaaatgctgttatctttgaggcactgtgtgagaatatagcaaaacag
gtcaaacgggttcaagagaatgatggtggtgatgattcaggtttggctatttcgctgact
gttcaagaggaggatgctaaggctcttaaattgatacaaagatgtgtgcagatggtgcat
ttggatgtcatgaaggaatgcctgaaggagggtgaccataatggagctgtgtctcatatc
cagtttcttcgccttgatcatggggtggaggaagctgattaccgcatggttttgcaagat
ctcgttaagaggggtttggtggggatggtggcctatgatgacacttggcttgccatgcga
agtaaattgttgtcgatatatgagaaagcactctcatcaaactccacacgtcttgttcac
atgatacagtccattcaggaggaattgctctctgaagaaatagagatgcataaagttttg
aatggcaaccaggttccaccccctcttgcacagcttttgaattttattgcgcagatgaca
cctgagacccaaggcagccatacatcgtcaattaagttggtgatctctgcatgcatgagg
gacatgtatcattatgctcgtatatcagggttgcatgtacttgaatgtgtcatggatgtt
gctctttctgctgtcaagagggaacaacttcaagaagctagcaacattcttttgttgtac
ccccgacttcaacctcttgtagctgttatgggttgggatcttttgtctgggaaaacagat
atgagaaggaagttgatgcagcttttctggactagtaaatcacaaattctcaggctggaa
gaatcttctctctatgataaatcaaacgaggtgtctgctgttgaacatctttgtgacttc
ctaagttaccaacttgatctggcttcttttgttgcatgtgtaaattctggacaatcatgg
agtttgaaatcatcattactcttgtctgggaaagggcatacggaacttgtaaatgaagat
ttccagttggacccatttgttgaaaatcttgttctggaaagattatcaatccatagcccc
cttcgagttttgtttgatgtagttccagacataagatttcaagaagctatcgagttattt
agcatgcaaccaatcacctctaatttagcagcctggaaaaggatgaaagatgttgaactc
atgcacatgcgctatgccatggaatctgctgtttttgctcttggagctatggggaacagt
aagaataatgaagttaaaagctatcaaatggcattatgttacttgaaagacctcagtatc
catttggaggccatcaacaacattccacgcaagataatgatggtgaacattgttatctca
cttttgcatatggatgatctttcttgcgacttatcgccatgtccaccacctaggagacaa
cctgatacgtccaacacctatagtggggaaagtgctgacccctgcactaatgaagaaggg
aataccatggtcgtatccttcacagggcggctccttaatatattgcggcagaatctacct
gcagctgttactgaagaggagattgcagtggatggaaatgtgcctactgatgggagacga
gctttagagtggagaatctcaaaggcaagatccttcattgaagattgggaatggcgctta
tcaatcttgcaaagccttcttcccttgtctgaccgtcagtggaaatgggaggaggcatca
actatactacgtgcagccccatctaagctactgaatctctgcatgcagagggcaaagtat
gacattggagaagaggctgtcaaccgtttttccctacctccagaagataaagcaactctt
gaactggctgaatgggtggatggagcctttaagagagcatctgctgcggatgctgtttct
cgtgctgctgatggaacttctgttgtccaagaattagatttttccactcttcgctctcaa
ttaggtcctttagttgcaactcttctatgtatcgatgtagctgcggcatcttcaaggtcc
tcaactttgtcccataagcttttagatcaggctcaagttatgttgtcagagatctatcct
ggtcgtgctcctaagataggcgctacttattgggatcagatttatgagattggaataatt
tcagtcgcaaagcgtcttctcaaacgtctacaagaattgttggaacaggacaagtttcca
gtgcttcaggctcttttaacgggagacctgataaatacttcatcaaaggatttccagcgg
caaggacatagggagcgtgctcttgcgatgctacatcaaatgattgaagatgcttacatg
gggaagcggcagtttcttagtggtaagcttcataatcttgcgagagctattgctgatgaa
gaaaatgaaagagaatatatgagagcagagagttcatatcctgataaggatgctttgatt
catgacaagggtggagttctaggacttggattgagacccatgaggcaaacattatcagtt
ccatctactggtgagaagtccatggcttctacatcatatgatgtgaaagatgctgaaaag
agaatatatggccccttgacttccaaggctacaacctacctctcccaatttatcctccat
attgcagctgttggtgacatagttgatgggacagatactactcatgacttcaactatttc
tctctcatttatgaatggcctaaagatcttttgactcgtttggtctttgaccgaggtagc
actgatgcagccgcaaaggtagcagaaattatgtctgctgattttgtccatgaagtgatt
tctgcatgtgtacccccgatttatccaccaaggtctggtcatggttgggcagacattgca
gtaattcctacatgccccaaaagtagttcagagtgtaaacttctttccccttcttcgaga
gaagccaagcccagttcatattgtccttcctcagccacacctggagttcctctgtaccct
cttcagttggatgttgtaaagcatcttgtgaaactctcccctgtcagggccgtcttagca
tgtgtttttgggaactgtatattatacggtggcagtgactctaccatatcaagttccttg
aacgatgtatcagtgcagaagcatgatgctgacagattattctatgagtttgcacttgat
cagtcagagaggttcccaaccttgaatcgctggatacaaatgcaaactaatcttcatcga
gtttcagaggttgctgtaactgctgagaacatgattagtgatggaagtgataaacccgag
gcaaaaacttctgtcaagcgctttcgtgagcatgatagtgattctgatttggagcatgat
gacttagctgttggcaccagcattccagtcctttcagagaccaccaatgaaactggtatt
tggcaagattctcccaagtctgaaactgctgaaattgataccacagtattcctttctttt
gggtgggagaatgaaaaaccatatgaaaaagctgttgacagattgatagatgaaggcaaa
ctaatggatgctcttgctctttctgatcgatgcttacgcgatggcgcttcagattattta
cttaagttacttatcgaacgtgaggaggaaaatcatactgtcttcaatcgttcaggtcac
tcgagcttcagaataccaagcaatagctggaaatattgtctacggctgaaagataaacaa
cttgcagcaacacttgtcctcaaatatttgcataggtgggagttggatgctgctttggat
gttctaaccatgtgtcactgtcacttgggcgaaaatgatccttctaagaaagaggttgtt
ctcaggaggcaagctttaatgcgatacagtcacatattatctgcagatgagcgttataat
agctggcaagaggttgaggcagagtgtaaggaagatcctgagggtttggcccttagatta
gctgaaaagggagctgtgtctgctgctttagaggttgctgaaagtgcagggttatctatt
gaacttcgtagagaactccagggccgtcaacttgtgaagcttcttacagcagaccccata
aatggtggtggtcccgctgaagcttcacgatttctgtcttccctgcgtgattcagaagat
gctctaccagttgcaatgggtgcgatgcagcagttgcccaacctgcgatctaaacaattg
cttgttcattttttcctgaaaagaagagacagcaacttgaacgaacctgagctttcccgg
cttaatttgtgggccttaggtcttcgtgtgttggctgttttgcccttgccgtggcagcaa
agatgctcttcgttacatgagcaccctcagctgattgtggaagttctgctaatgcgcaaa
caactacaatctgcttctttgatactcaaggaattcccgtcattgagagacaacaacaaa
attcttacatatgccgccaaagcaatttctgttaccataagcccacctcgtcgtgagtcg
cggatacaagtttcaggtccaaaaacaaagcagaagtctggaactcctacaagatcttca
ttctccaacagcctaagtaacttgcaaaaggaggctcgtagggcattttcttggaatcca
aggaatagtgcagagaaagctgctcctaaggatgttcagaggaaaagaaaaggctctgga
ctgccacaatctgaaaaagctacatgggaggcaatggctggcattcaagaagatcgtgtt
tcatcatacagcatggatgggcaagaacgtattccttcagtttctattgctgaacagtgg
atgctcacaggtgacccatataaggatgaagctgtgcggtcctctcatcactatgaaagt
gccccagatatcattctcttcaaggaactgctttctctgtgtgcggatgagagttcttcc
gccaaaggtgctctggatttgtgtgttaatcaaatgagagctgttttaagctctcaacag
cttcctgaaaatgcatcaatggaaatcattggtcgagcttatcatgctacggagacattt
gttcaggggctcctttatgccaagtctcagcttagaaagctttctgggggaaatgagtta
tccagttattctgaaagaagtaaagatgttgaggatacattctctgatgcaggcagctct
accatggggaaccagtcaacagatgaggtctctgaagttctatcgcaagctgacatttgg
ctcagacgggctgaactgttgcaaagccttctgggatatggaattgctgcttcgcttgat
gatattgccgataaggaatcttctgcacgactgcgtgatcgactgattctggaggaacgg
tatagcatggctgtgtatacttgtaagaagtgtaagattgatgcgtttgctgtatggaat
gcgtggggacttgctttaattcgaatggagcactatgctcaagctcgtgtcaaattcaag
caagcacttcaattgtacaaggatgaccctgcaccagttattcaagatatcattaataca
attgaaggaggtccaccggcagatgtttcattggttcgttccatgtacgagcatttggct
aaaagtgcacctgcaatcttggatgattctctttctgctgactcatatctcaacgtttta
tacatgccatctacatttccacgatctgagagatccaggagcggacaagaagcttcaaac
gataattcctctaatagtttagaatttgaagatgttcctcgcagcaacctggatagcatt
agataccttgaatgtgttaactatttacaagaatttacacgccagaatttgcttgatttt
atgtttaagcatggtcattataaggatgcttgcatgctgttttttcctgaaaatgctgtt
ccttctcctcctcaaccgtcgtcacttgcggttatgtcatcatctccccagcagaaacca
gatcctctttcaactgattatggatcggttgatgatttgtgtgacctgtgcattggtttt
ggagccatgcatgtcttagaggaagtaatgtcttccagaatgtcatccacggcaacagtg
gatgtggaagtaaagcagcatacagcagctgcacttaatcgcatttgtgtcttctgtgaa
actcataagcatttcaactacctatacagattccaggtgatagggaatgatcatgtggct
gctggcctttgctgtatccagttatttgtgaattcatctgtgctggatgaatctataaaa
cacctggaaaatgccaagatgcattttgatgaagccttatcagcaagatacaaaagtgga
ggctcaactaagcttgtcaccaagggtgtgcgtggaaaaagtgcatcacaaaaacttaca
gaagaagggctagtgaagttttctgccagagttgcaatgcaggtggatgtgataagatcc
tttaatgatacagatgggcctcagtggaaatactctctttttggaaatccaaatgatcca
gaaactttcaggcggaggtgtgagattgcagaaactcttgtcgagaagaactttgacttg
gctttccaagtgatctacgagttcaatctttctgctgttgatatatatgctggtgttgcg
tcatcgcttgccgatagaaagaaaggcggacaattgactgattttttcagaaatattaag
ggcacaatcgacgatgaagactgggaccaggttttgggagcagctatcaacgtatatgcc
aacaaacataaagaacgccctgatcgtcttatcgacatgttaactagcagccacaggaaa
gttttggcgtgtgtggtgtgtggccgccttaagagtgccttccagattgcttctcgaagt
ggaagtgtggcggacgtccaatatgttgcacatcaggcgttacacgcaaacgcacttcca
gtgctcgatatgtgcaaacaatggttagctcaatacatgtaa
DBGET
integrated database retrieval system
