Cynara cardunculus var. scolymus (artichoke): 112527390
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Entry
112527390 CDS
T05604
Name
(RefSeq) protein SPA1-RELATED 2-like isoform X1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
112527390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccav04121
]
112527390
Ubiquitin system [BR:
ccav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
112527390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Pkinase
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_SCAP
WDR90_beta-prop_4th
PK_Tyr_Ser-Thr
WD40_like
Motif
Other DBs
NCBI-GeneID:
112527390
NCBI-ProteinID:
XP_024993776
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Position
LG 15:complement(17842979..17853609)
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AA seq
1048 aa
AA seq
DB search
MDEIAANEATAINNIDSKRFLRKESGFLPSRRSSNMLEMQEMLIPGDINVQESKMGLFID
VLDGKNVTRVDTSEHACVSPRFVDDTGTMVEELTVRNCNSGNLEIGASSARDKMMHKGQN
NWQQFHRRAEGAVTGVWEDSGSTLFPELLNNKQQSENQKDTMDNSRREEKQPALCNTLLS
PGGIRTKILSQSGFSQYFVKNTLKGKGVICSGPSHDGLVHIRDQNHQKDALRDFNSAPDS
SKETIVHPSDGIAESWPNVSGVHDGLCLREWLKAGQNKVDKSKSLYIFKQILDLVDSSHS
RGVALQALRPSSFKLTLSNQVLYTGSPIQKELMGNIVGKEFHHMENNGDEKRPLEHDPLL
GDNRSSKRRKHGDERNSFRRWPQFTARAGFKYGNAHDIGAVNGFPRDSGYGFNEESIPKR
DDSYPIQSMSNTLHVSATSQMASNLRSDPLEEQWYASPEDHRERCSTLSSNIYSLGVLLF
ELLASSESARTHAIAMMDLRQRILPPSFLSENPKEAGFCLWLLHPEALSRPTTRDILQSQ
LVSGIQQSSMEELSSSIDQEDAESDLMLHFLASVKEQKQKSATKLVKDIRYLESDISEIE
LRRPNNVFLGEQKQSYESEGNGSIQENRPTLGEKLRPSAFSSSGGSRLISNINHLEHAYF
SVRSSIGIPNSDTNKPGEHEILRSRENNMGAIKKEANNKPVDHLGVFFKGLCKYARYSKF
EVRGTLRNGDFSSMGNVICSLGFDRDEDYFATAGVAKKIKVYDFQALLNDSVDIHYPAVE
MSNKSKLSCICWNSYIRNYLASTDYDGVVKLWDAGTGEAVSHHIEHERRAWSVDFSPVDP
IKLASGSDDCSVKLWSINEKKSLATIKSVANVCCVQFSPYSTHLLSFGSADYRTYCYDLR
HTSTPLCTLAGHDRAVSYVKFLDSGTLVSASTDNTLKLWDLNKANNGCLSTSSCILTFKG
HTNEKNFVGLSVADGYIACGSETNEVFAYYRSLPMPITSHKFGSIDPVSGKETENESNQF
VSSVCWRKKSDMVVAANSSGCLKLLQMV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatagcggccaacgaagcaactgcaattaacaacatcgatagcaaacggttt
ctgagaaaagagagtgggtttttgccaagtcgtcgaagctccaacatgcttgaaatgcag
gaaatgcttatacctggtgacattaatgttcaagaaagcaagatgggtttgtttatagat
gtcttggatggaaagaatgtcactcgggttgatacatcagagcatgcatgtgtcagccct
cgattcgtggatgataccgggactatggttgaagagttaactgtgagaaattgtaatagt
gggaacttggaaataggtgcctcaagcgcgagagacaaaatgatgcataagggacagaac
aattggcagcaattccatcggagagcagaaggggcagtaacgggtgtgtgggaagattct
ggctccactttattcccggagcttctgaacaacaaacaacaaagcgaaaatcaaaaggac
acaatggacaattcacgacgtgaggaaaagcaacctgctttatgcaatacattgttatct
cctggtgggattcgaacaaagattctttctcaatccggtttttctcagtattttgtgaaa
aatacattgaagggaaagggtgtcatttgcagtggtccatctcatgatggtcttgttcat
attcgtgatcagaatcatcaaaaggatgctttgagagatttcaattcagcgcctgattca
agtaaggaaactattgttcacccttcagacggcatagctgagtcttggcccaatgtttct
ggtgttcatgatggtttgtgcctgagagaatggcttaaagctggtcagaacaaggtggac
aaatccaagagtctgtatatattcaaacagattctagatctggttgactcatcacattct
cgaggagtggctttgcaagccttacgaccatcgtccttcaagttgacgctatcaaaccaa
gttttatacactggttcacctatccagaaagaactcatgggaaatatcgtgggtaaagaa
tttcatcacatggaaaataatggagatgaaaagaggccattggagcatgatcctcttctt
ggtgataaccgaagctcaaaaagaagaaagcatggggacgagcggaactctttccgtagg
tggcctcaatttacagcacgtgctggtttcaaatacggaaatgcacatgatattggcgct
gttaatggctttcctcgtgattctgggtatggatttaatgaagagagcatccctaaaaga
gacgattcatatccaatccaaagcatgtccaatactctgcatgtgtctgctacgtcccaa
atggcgtcaaacttacgcagtgatccgttggaagagcagtggtatgccagtccagaggat
catagagagaggtgttccactttgtcttcgaatatctactctctaggcgttcttctattt
gagctacttgcgtcttcagaatctgctagaacgcatgctattgcaatgatggatctacgt
caaaggatccttcctcctagtttcctctcagagaatcccaaggaagctggattttgtctt
tggctgcttcatcctgaagcattgtcacgcccaacaactagggacatcctacagtcccag
cttgtaagtggaatacaacaatcgtccatggaagagttgtcatcatccattgatcaggag
gatgctgaatcggatttgatgctgcattttcttgcatctgtaaaagaacaaaagcagaaa
agtgccacaaaattagtcaaagatatcaggtacttggaatccgacatttcagagatcgag
ttaagacgaccaaataatgtttttcttggtgagcagaaacaatcctatgaatctgaagga
aatgggtccattcaagaaaaccgtccaactttgggggaaaaactaagaccgtctgcattt
tctagttccggtggatcacggttgataagcaatataaatcatcttgaacacgcctacttt
tctgttaggtccagcatagggattcccaacagtgatacaaacaaacccggggagcatgaa
attttaagaagtcgggaaaataatatgggggcaataaagaaggaagcaaacaacaaacct
gtagatcacttaggggtcttcttcaaaggtttgtgtaaatatgctcgctatagtaagttt
gaggtacggggtactttaaggaatggtgattttagtagtatgggaaatgttatatgttca
cttggttttgatcgagatgaggattattttgcaacggctggagtggcaaagaagataaaa
gtatatgattttcaagctctattgaacgactctgttgacatccattatccagccgttgag
atgtcaaataaatcgaagcttagttgcatttgttggaatagctatatcaggaactatctg
gcttcaacagactatgatggcgtggtcaagttatgggatgctggaaccggtgaagcagtt
tcccatcatatcgagcatgaaaggagggcgtggtcggttgacttttctccagtggatcct
ataaaattagccagcggaagtgatgattgttctgtgaaactatggagcattaatgagaag
aagagcttagccacaatcaaaagtgttgcaaacgtctgctgtgttcaattctctccttac
tctactcatttgctgtcttttgggtcggctgattatagaacttactgttatgatcttcgg
catacttccaccccgttgtgtacattggctggccatgatcgagctgttagttatgtgaaa
ttcttggattctggaacccttgtttccgcatcgactgacaacacgctaaagctctgggac
ctcaataaagccaataatggttgcttatcaaccagcagttgcatcttaaccttcaaagga
catactaatgagaagaattttgttggtttatcggttgctgatggatacattgcatgtggt
tcagaaactaacgaggtgtttgcttactatagatcattgccaatgcctatcacttcccac
aagtttggctctattgatcctgtttcgggaaaagagactgaaaacgaaagcaatcagttt
gtttcaagtgtctgttggagaaaaaaatcagacatggtggttgctgccaactccagtgga
tgcctgaaattgttgcagatggtctaa
DBGET
integrated database retrieval system
