Cynara cardunculus var. scolymus (artichoke): 112527530
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Entry
112527530 CDS
T05604
Name
(RefSeq) LOW QUALITY PROTEIN: retinoblastoma-related protein
KO
K04681
retinoblastoma-like protein 1
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ccav03000
]
112527530
Transcription factors [BR:
ccav03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
112527530
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Carbam_trans_C
Rb_C
DUF2570
Motif
Other DBs
NCBI-GeneID:
112527530
NCBI-ProteinID:
XP_024993988
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All DBs
Position
LG 15:13154760..13163566
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AA seq
1085 aa
AA seq
DB search
MLYLLFFPRDRTAGSPKAEGKLGCXIHQFPLSLIDASALKETSPLNRRFSLAVHYLAGLL
VSRMEDLKPLNTTADSSTENGATIEARFRDFCKGRLTMDDNPLEEAMKLFKQSKHLFLTN
ASSLGSGTPEEAEHYWFAFLLFSLKRLGQRDAAEDATSTNENGLNMCRILRVAKLNFVDF
FKELPQFIVKIGPILSNLYGSDWESRLQAKELQANFVHLSLLSKYYKRAFRGLFLATHAN
VDGQPIVANSPDYISDCHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPAR
FRNFSLNDSSRFVKKDKGVDLLASLCNMYETSEEELRKTMAKTNNVVAEILKKKPCLASE
CPNGNLDNIDTDGLTYFEDLLEESSLSSNLNVLEKDYDAAICQEGELDERMFIDDDESLL
GSSSLSGGAINTSGTKRKFDLMTSPTKTITSPLSPYRSPSASHTNGSLGGVNSKMIATPV
STAMTTAKWLRTNVSPLPSKPSVELERFLSSCDKDVTSDVIRRARVILEAIFPSSGLGDR
SVMANIQSTNLMDNIWAEQRRLEASKLYYRVLQAMCTAESQILHGNNLTSLLTNERFHRC
MLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLE
ERLLESMVWEKGSSMYNSLTVARPVLSSEINRLGLLAEPMPSLDAIALQVNMSCGGLPPV
PSLQKRESSPGKNCDLRSPKRVCTEYRSVLVERNSFTSPVKDRLLGINNLKSKLLSPALQ
SAFASPTRPNPTGRGETCAETSVNLFFSKIVKLAAVRINGMVERLQLSQQIRERVYCLFQ
QILSQRTALFFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPHCKPQVFRAVFVD
DRSSSRRNGKTGQDHVDIIMFYNETFIPAAKPLLVELAPVGVAKNPNQVSEANNNDEGGP
CPGSPKVSSFPSLPDMSPKKVSAVHNVYVSPLRSTKMDALISHGSKSYYACVGESTHAYQ
SPSKDLTAINNRLNGRKVRGTLNFDDVDVGLVSDSLVANSLYLQNGNGNANGKAPSSSSH
QLKTE
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgctatatttgttgtttttcccgcgcgaccgtaccgccggatccccaaaagcagaggga
aaactaggttgctgaatccatcaatttccactctctctaatcgacgcatctgccttaaaa
gagacctctcctttaaatcgacgattctcccttgccgttcactatctcgccggtttactt
gtgtcgaggatggaagacctcaagcctctaaatactaccgctgattcctctacggaaaac
ggagctaccattgaagctcgattccgagacttttgcaagggtagattgacaatggatgat
aaccctttagaagaagcgatgaagctgttcaaacaaagcaaacatcttttcttgacaaat
gcatcaagtcttggaagtgggacgcccgaggaagcggagcactactggtttgcatttctc
ttattctccttgaaaagattaggccagagggatgctgcagaagatgctactagtactaat
gagaatggtctcaacatgtgccggatactcagagtggcaaaactgaattttgtagatttc
tttaaagagctacctcaatttatagtcaagattggtcccattttaagcaatctctatggt
tctgattgggaaagtagacttcaggctaaagagttgcaggccaattttgtgcatctcagc
cttttaagcaagtactataaacgtgcatttcggggacttttcctagcaacccatgctaat
gttgatggtcagccaattgttgccaattctccagactacatatcagattgccatcgtttt
ggatggctactatttttggctcttcgagtccatgcattcagtcgtttcaaggacttggtc
acttgcactaatggattggtctcgatcctggcaattttgatcattcatattccagctcgc
ttcagaaacttttctcttaatgattcttcacgctttgttaagaaggacaaaggtgtggac
ctgcttgcatcactctgtaacatgtatgagacgtcagaggaggagttgcgaaaaacaatg
gctaagacgaataatgtagtggcagaaattttgaaaaaaaagccttgcttggcatcagaa
tgtccaaatgggaacttagacaatattgacacagatggcttgacatattttgaagattta
ttggaggaatcatctttatcttccaatttaaatgttctagaaaaggattatgatgcagcg
atatgccaggaaggcgaattagatgaaaggatgttcattgatgatgatgaaagcctacta
ggttcaagcagcttgtctggtggtgcaattaatactagtggaaccaagaggaagtttgac
ttaatgacctccccaacaaagacaattacgagtccactttctccttatcggtctccctca
gcatctcataccaatggaagtctgggtggtgttaattcaaagatgatagctactcctgtt
agcacggcgatgactactgcaaaatggctccggactaatgtttctccacttccatcaaaa
ccttctgtagagttggagcggttcttgtcatcatgtgacaaggatgttactagtgatgtc
ataaggagggcacgggtaatattggaggctatttttcctagcagtggtttgggtgatcga
agtgttatggcaaacattcagagtactaatctgatggataatatttgggctgaacagcgt
agattggaagcatcaaagttatactatagagttttgcaagcaatgtgtacagcagagtcc
caaatactgcatggtaacaatctaacctccttgctaacaaatgagaggtttcacaggtgt
atgctagcatgttcagcagaactggttcttgctacccataaaacagtgacaatgttgttt
cccgctgttctggaaagaacgggaattactgcttttgatcttagtaaggttatagaaagc
ttcatcagacatgaagaatctcttccaagagagttgaggcgacatctgaattctctggaa
gaacgtcttttggaaagcatggtgtgggaaaaaggctcctcaatgtacaactctttgaca
gtggcaagaccagtgctttcttcagaaatcaaccgtcttgggttgttggcagaacccatg
ccatctttggatgcaattgcactgcaagttaacatgtcttgtggaggattgccacctgtt
ccttcattgcagaagcgtgaaagctcaccaggtaagaattgtgatcttcggtcaccaaag
agagtttgcacagagtatcgaagtgttttggttgaacggaattccttcacatcaccagtc
aaggatcgccttctaggaataaataatctcaagtcaaagctactatcgcctgctttgcag
tctgcgtttgccagtccaacaaggccgaatccaactggtagaggagaaacatgtgcagaa
acatccgtaaatctattctttagcaagattgtaaagttagctgctgttagaatcaatggg
atggttgaaaggctgcaattgtcgcaacaaataagagagagggtatactgtctttttcaa
cagatcctcagtcagcgtacagctctatttttcaaccgccatattgaccagatcatcctg
tgttgtttctatggagttgcaaagatatcgcaactgagcttaacttttaaagaaatcatc
tacaactacagaaagcaaccacattgtaaaccccaagttttccgtgcggtatttgttgat
gacaggtcatcttctcgacgcaatgggaaaacagggcaggatcatgttgatatcataatg
ttctacaatgaaacattcattccagctgcaaagccactgttagtggagcttgcccctgta
ggagttgctaaaaaccctaatcaggtttcagaagcaaacaataatgatgaaggtggtcca
tgccctgggtcacccaaggtatcttcattcccgagtcttcctgatatgtccccgaagaag
gtatctgcagtacacaatgtatatgtgtctccattgcgatcaaccaagatggatgcttta
atatctcatggatcgaaaagctattatgcatgtgttggggagagcactcatgcttaccag
agtccatcgaaagacttgactgccatcaacaatcggttgaacggacggaaggtgagaggg
acgcttaactttgacgatgttgatgtggggttggtgagcgactcgttggtggcgaacagc
ctctatctacaaaatgggaacgggaatgcgaacggaaaagcaccatcttcatcaagccac
cagctgaaaacggaataa
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