Cynara cardunculus var. scolymus (artichoke): 112527568
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Entry
112527568 CDS
T05604
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ccav03009
]
112527568
Ribosome biogenesis [BR:
ccav03009
]
Eukaryotic type
90S particles
Other 90S particles
112527568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
NRDE-2
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
112527568
NCBI-ProteinID:
XP_024994048
LinkDB
All DBs
Position
LG 1:complement(22446258..22469146)
Genome browser
AA seq
1918 aa
AA seq
DB search
MAKPSKKSFNKKSDDRLKTFQKPSKKPFKPHQKSDSIISKDALPIQLEDDVPDFPRGGQS
SLSRAEVDKVRSEVDKEFETETIVLKKKRKEKMKKMSQSTDDDLGSLFGDGKAGKSPRFA
NKITLKNLTAGMKLWGIITEVNEKDLVVSLPGGLCGLVRASEAIDPSLHDEVKGDTEDDV
LSTIYTVGQLVSCIVLQLDDDKKEKGKRKIWLSLRLALLHSSFTLDILQEGMVINAYVKS
IEDHGYMLHFGVTSFTGFMQNSSNDAGSRGTQMVVGSLVQGVVKSIDRTRKVVYLSSDAE
EVVKHVTKDLKGIPFNLLIPGMMVNASVRSTLENGIMLSFLTFFTGTVDIFHLGKTLPTS
KWKDEYTQNKKVNARILFIDPSTRAVGLTMNPHLVHNNAPPSLVKIGDIFDDSKVVRVDR
GSGLLLEIPTAPIPTPAYVSVSDLSDKEVRKWEKSFKEGSVVRVRVFGFRILEGVATGVL
KTSAFEGSVFTHSDVRPGMVMKAKVIIVDSFGAIVQFASGVKALCPLRHMSEFEIVKPRK
KFQVGAELVFRVLGCKSKRITVTHKKTLVKSKLPVLSSYTDATEGLLTHGWITKIESHGC
FVRFYNGVQGFAPRAELGLDPGSDVSSMYHVEQVAKCRVTSSVPASRRINLSFLATPART
SEDDTIKLGSLVSGTVERVTPHGIIVDVGVKGYMKGMISFEHLADNHGLASKMESVLKPG
YKFEKLLVLDVENKNLILTAKYSLVIAAQQLPADASQVYAHSVVHGYICNVIDTGCFVRF
IGRLTGFAPKNKAVDDHRADLSKVFYVGQSVRSNILDVNSETGRITLSLKQSLCSSVDAS
FIQEYFLLEEKIAKLQYSCSKPSSLKWVKEFPIGNLIEGTVHEEKESGFVISFQKYNDVF
GFITHHQLGRSTVDIGKTVKAVILDVAKMDHLVYLSLKPEFVNRCVENSDSCTPKKMRKR
SAHKDLEVHQTVNAVVEVVQENYLVLSIPDAKFALGYASLSDYNTQTLQPKQFVNGQRVS
ASVVALPDSSTAERLLLLLKSNSEVDTSSAKRAKKKSSYDVGSAVQAEVTEIKPLELRLK
FGSGLRGRIHITEASDGNIVEDPFGNFKIGQTLTARIVSKAKVENSNNFRWDLSIKPSVL
ADQADVHTAVEFSYSIGQSVTGFVYKVDKDWAWLAVTRDVRAQLYILDSACNPSELHDFQ
NRFHIGKPISGYILSTSKEKRLLRLLLHPVAGGLLSNGASMTDDLVSLSSETVTSHICEG
AVVGGRISKILPGVGGLIVQIDPHLSGKVHYTELADSWISNPLSSYHEGQFVKCKVLDIG
HSGTGTVHVDLSLRSSLVGIDENSKELQSYVKSCSNRYEKIEDLHPDMAVEGYVKNITPK
GCFIMLSRKLDAKILISNLSDDYVSKPEEEFPIGKLVNGRVVSLEPLSKRIEVSLRKTSG
TKVPKSDKGGFSSLNVGEIISGRVKRIEPYGLFIAIDQSKLVGLCHVSELPEDRMDNIET
KYKIREKVKAKILKVDEERQRISLGMKGSYFDTNTDAGAPADDGSDALDEDDSELSDQNP
NEFQEPLFPFENGKHPVLAEVESRAAVLPLDVPLDETDDSPVNDVVAQSPEPLDNKSETN
ENKNRRTKKKEMEEREREIRAAEERLLQEDVPRTADDFEKLIRNSPNSSFIWIKYMAFLL
SLNEVEKARSMAERALRTINIREEAEKLNVWVAYFNLENEYGNPPEDAVLKVFQRALQYC
DPKKVHFALLGMYERTEQHKLADELLEKMIKKFKHSCKVWLRRIQRVLKQKEDLVQSVVK
RALICLPKHKHIKFITQTAISEFKTGVPDRGRSMFEGMLREYPKRTDLWSVYLDQEIRLG
DVDVIRSLFERTICLELPLKKMKFLFKKYLEFEKSYGDEERTEYVKAEALKYLEKARP
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaccttcaaagaaatccttcaacaagaaatcagacgacaggcttaaaacgttt
caaaaaccatctaaaaagccttttaaaccgcatcaaaaatctgacagcattatatctaaa
gatgctctaccaattcagcttgaagacgatgtccctgacttccccagaggtgggcaaagt
tcactcagtagggcagaggtagataaagttcgctcagaggttgacaaagaatttgaaaca
gagactatagttttgaagaagaagagaaaagagaaaatgaaaaagatgagtcaatcgact
gatgatgacttgggctcactttttggtgatggaaaggctgggaaatcgcctaggtttgct
aacaagatcactttgaagaatcttactgctggaatgaagctgtggggtataatcactgaa
gtgaatgagaaagatcttgtagtcagtcttccagggggcctttgtggtttagttcgtgct
tctgaagcaatagatccttctttacatgatgaagtgaaaggggatacagaagatgatgtt
ctttctaccatatataccgttggccaactggtttcatgcatagtactgcaattagatgat
gataagaaagagaaagggaagcgcaagatttggctctctctgcgtcttgctttgttgcat
agtagcttcaccttggatattcttcaagaagggatggtcattaatgcatatgtgaaaagc
attgaagaccatggctacatgcttcattttggagtaacttcatttactggttttatgcaa
aatagcagcaacgatgcaggaagcaggggcacacaaatggttgttgggagcctcgttcaa
ggagttgtaaagagtatcgatagaactcgcaaagttgtttatcttagttctgatgctgag
gaggtggtcaaacatgtgacaaaggatcttaaaggcattccttttaatctgcttattcct
ggtatgatggttaatgctagtgtgcgctcaaccctcgaaaatggcatcatgctgtccttc
ctcaccttcttcacgggaactgtcgatatatttcatttgggaaaaactcttcccacttca
aagtggaaagacgagtacactcaaaacaaaaaggttaatgctcggattttgttcattgac
ccctcaaccagagctgttggtttgaccatgaatccccatcttgttcataacaatgctcca
ccttcacttgtcaaaattggagatatattcgatgattcaaaagtggttcgagttgataga
ggatctggcctgctgctggaaatccctactgctccaattccaactcctgcatatgttagt
gtgtccgatttgtctgacaaggaagtccggaaatgggaaaaaagcttcaaggaaggaagt
gtggttcgtgtaagggtttttggattccggattttggagggggttgccactggtgtttta
aagactagtgcatttgaaggctctgttttcactcactctgatgtcagacctggaatggtg
atgaaggccaaagttattattgttgatagttttggtgcaattgttcaatttgctagtggt
gtgaaggcactctgccctcttcgtcatatgtcggaatttgaaattgtaaaacctagaaaa
aagttccaggttggcgctgaattggtttttcgtgtgcttggttgcaagtccaaaagaatt
accgtcacacacaagaaaacacttgtaaaatcgaagcttccggttcttagctcatatacc
gatgcaaccgaagggttgttgactcatggatggatcacaaaaattgagagccatggttgt
tttgttcggttttacaatggcgtgcaaggatttgcccccagagctgagcttggtctagat
ccgggatccgatgtgagttcaatgtatcatgttgagcaagtcgccaaatgcagagttaca
agttcagttcctgcttcaaggaggatcaaccttagtttcctggcaacgcctgcaaggaca
tctgaagacgacacgatcaaacttgggagtcttgtatcaggtactgttgaacgagtaact
cctcatgggataatagttgatgtcggtgttaagggttacatgaagggcatgatttctttt
gaacatctggcagacaaccatgggcttgcttctaaaatggagtcagtattgaagccagga
tacaagtttgaaaaacttttggttctagatgttgagaacaaaaacttgatactaactgcg
aaatattctcttgttattgcggctcagcaattgcctgcagatgccagtcaagtttatgcg
cattcagtggtccatggttatatctgtaatgtcattgacactggttgttttgtgcgcttc
attgggcgtttaactggttttgctccaaaaaacaaggctgttgatgaccatagagctgat
ctttctaaagtcttttatgttggacagtctgttcgtagtaacatactggatgttaatagt
gaaacaggtaggataacactatccctgaagcagtcgttgtgctcttcggttgatgcatct
ttcattcaagaatacttcctcttggaggaaaagattgccaagcttcagtattcttgttca
aagccttctagcctgaaatgggtcaaagagttccctattggtaatttgattgagggaacg
gtccatgaagaaaaggaatctggatttgttatcagctttcagaagtacaatgatgttttt
gggtttatcacacatcaccaacttggtcgatcaactgtagatattggtaaaactgtcaaa
gccgtaattcttgatgtagccaagatggatcatcttgtgtatttgtccttgaagccagag
ttcgttaacagatgcgtggagaactctgattcctgcactcccaaaaagatgcgcaaaagg
tcagctcacaaggatttggaggtgcatcaaactgtaaatgcagtagtggaagttgtccag
gagaattatttggttctttctattccggatgctaaatttgcactgggatatgcatctcta
agtgactacaatacccaaacattgcaaccaaaacaatttgttaacggacaaagggtgagt
gcatctgttgtggctcttccagactcttccacagcagaaaggctactgttgctgcttaaa
tctaacagtgaggttgatacctccagcgcaaagagggcgaaaaagaagtctagctatgat
gttggttctgctgtccaggcagaggttacagaaataaagcctcttgagcttagattgaaa
tttggttcaggtttacgtgggcgaatacatatcacagaggcaagcgatggtaatattgta
gaggacccatttggtaacttcaaaattgggcagacactgacagcaaggattgtgtcaaaa
gctaaggttgaaaatagtaataacttccggtgggacttgtcaatcaaaccctcagttctt
gcagaccaagcagatgttcacacagcagtagaattcagttattcaattggtcaaagtgta
accgggtttgtgtataaagtggataaagattgggcctggttggcagtaactcgagatgta
cgggcgcagctatatattcttgacagtgcatgtaacccttctgagcttcacgatttccaa
aatcggtttcatataggaaaacctatctccggctatattctaagtactagtaaagagaaa
agactgttgaggttactattacatccagtagctggtgggctactttctaatggtgcttcc
atgacagatgatttagtcagtctctcgagtgaaactgtcacatctcatatttgtgaaggt
gctgttgttggtggcagaatttctaaaatactgccaggtgttggtggcttgattgtgcaa
attgatccacacctctcgggtaaggttcattatactgaactagcagattcatggatatcc
aatccgttgtctagctatcatgaagggcagtttgtcaaatgcaaagtactcgacattggc
cattctgggacaggcactgttcatgttgatttgtctttgcgctcatctttagttgggatc
gatgagaactctaaagaactgcagtcatatgtgaaatcttgcagtaatcgttatgaaaag
attgaggatcttcatcctgatatggctgtagagggttatgttaagaacatcacaccaaag
ggatgtttcattatgctttctaggaagcttgatgcaaaaatactgatctcaaacttgtcc
gatgactatgtctcaaaacccgaagaagagttccctattggcaaacttgtaaatggcagg
gtggtttcgttggagcctctatcaaagcgaattgaagtcagtcttcggaaaacaagtggt
acaaaggtaccaaaatctgacaagggtggcttcagtagtctcaatgttggagaaattata
tctggaagggtgaagcgtattgagccgtatggcttatttatcgcaattgatcaatccaag
ttggttggactgtgccatgtctctgagctccctgaggatcgtatggacaacatcgaaaca
aagtacaaaatccgggagaaagttaaggccaagatcttgaaggttgatgaagaaagacaa
cgaatctctttaggaatgaagggatcatattttgatacgaatacagatgctggagcacct
gcagatgatggttctgacgcactcgatgaggatgattctgaattaagcgatcaaaaccct
aatgagttccaggagccgctctttccgtttgagaatgggaagcatccagtattagctgaa
gtggaatccagggctgccgtccttccacttgatgttcctttggatgaaacagacgactca
cctgtgaatgatgtagttgctcaaagtccagagccgcttgataacaaaagtgagacaaat
gaaaacaaaaataggcgcaccaagaagaaagagatggaagaaagagagcgagagattagg
gctgctgaggaaagactattgcaggaagatgtaccgagaactgctgatgactttgaaaag
ttgatcagaaactctcccaatagcagctttatctggataaagtacatggcatttttgctc
tctttgaatgaagttgagaaggctcgatcaatggctgagagggctttgaggacaatcaat
atcagagaagaggcagagaagctaaatgtctgggttgcttactttaatttagagaatgaa
tatggaaaccctccagaggatgccgtcttaaaagtttttcaaagagcattgcagtattgt
gaccccaaaaaggtccactttgcactattagggatgtacgagaggactgagcaacacaaa
ttggctgacgagcttctcgaaaagatgatcaagaagtttaagcattcatgcaaggtttgg
ttaaggcggattcagagagtattaaagcaaaaggaggatctggtccaatctgttgtgaaa
cgggctctcatatgccttcccaaacacaagcatattaagtttatcacacagacagcaatt
tccgagttcaagactggagttcctgatagaggaaggtcaatgttcgaaggaatgcttcgc
gagtacccaaaaagaaccgatttgtggagtgtttacctggaccaagagattcggcttgga
gacgtggatgtgatccgttctttatttgagagaaccatatgcttagagctgccacttaag
aagatgaagttcttatttaaaaaatatcttgaatttgagaagtcatatggcgatgaagaa
agaaccgagtacgttaaggcagaggccctgaaatatcttgagaaagcccgtccttaa
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integrated database retrieval system
