KEGG   Cynara cardunculus var. scolymus (artichoke): 112527571
Entry
112527571         CDS       T05604                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav04142  Lysosome biogenesis
ccav04145  Phagocytosis
ccav04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    112527571
   04142 Lysosome biogenesis
    112527571
   04148 Efferocytosis
    112527571
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ccav04131]
    112527571
Membrane trafficking [BR:ccav04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    112527571
   Hops complex
    112527571
SSDB
Motif
Pfam: VPS18_solenoid_2nd VPS18_RING_C zf-RING_Vps41 zf-RING_11 zf_RING_Vps8 zf-C3HC4 zf-RING_5 zf_RING_Vps8_fungal zf-RING_2 zf-RING_UBOX zf-rbx1 RPN1_RPN2_N Nup54_57_C zf-C3HC4_2 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 112527571
NCBI-ProteinID: XP_024994046
LinkDB
Position
LG_15
AA seq 302 aa
MRACVHIYSMMFMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVVEQEKG
TKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNQQIEKLKEEM
NDATHGADNIRNDIGALAQRYAVVDRDEECGVCRRVILSAGADYRMARXYTTIGPMAPFY
VFPCGHAFHAQCLVAHVTKCTDQNQAEYILDLQKQLTLMSIEPKEGVNGGINGDDSITSV
APVDKIRSQLDDAIASECPFCGDLMISEISKPFVLPEESYLVSSWEIMSKNMGSEKGISF
VV
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcgcgcctgtgttcatatttacagcatgatgtttatgcatgaagaagctgttgcactt
gctcttcaggttgacccagagcttgctatggctgaagcagacaaagtggaggatgatgaa
gacttgaggaagaaactttggcttatggttgccaagcatgttgttgagcaggaaaagggt
actaaacgagagaacattaggaaggcaatagcatttctcaaggaaactgatggtctattg
aagatcgaggatatcttacctttttttccagactttgcactaattgatgacttcaaggaa
gcaatttgttcatctttagaggattacaaccagcaaattgagaaattgaaagaggagatg
aatgatgcaacacatggtgcagataacataagaaatgatattggtgcccttgctcaaaga
tatgcagtcgttgaccgtgatgaggaatgcggggtttgccggcgggttattttgtctgcg
ggtgcggattaccgaatggccagggrttatacaacgatagggccaatggcccctttctat
gtcttcccttgcggacatgcctttcatgcgcaatgtcttgttgcccatgttaccaaatgt
actgatcaaaatcaagctgagtatatactggatcttcagaagcaactcactttaatgagt
atcgaacccaaggagggtgtaaatggtgggataaacggtgatgactccatcacaagcgtg
gcccctgttgataagattcgatcgcagttggatgatgcaatagcgagcgaatgcccattt
tgtggggatctgatgataagcgagatatcgaaaccgtttgttttaccagaagaatcgtat
cttgtgtcttcatgggagatcatgtcaaagaatatgggaagcgagaagggcatttctttt
gttgtatag

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