KEGG   Cynara cardunculus var. scolymus (artichoke): 112527708
Entry
112527708         CDS       T05604                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030  DNA replication
ccav03410  Base excision repair
ccav03420  Nucleotide excision repair
ccav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112527708
   03410 Base excision repair
    112527708
   03420 Nucleotide excision repair
    112527708
   03430 Mismatch repair
    112527708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccav03032]
    112527708
   03036 Chromosome and associated proteins [BR:ccav03036]
    112527708
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112527708
DNA replication proteins [BR:ccav03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    112527708
  DNA Replication Termination Factors
   ELG1-RFC complex
    112527708
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    112527708
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     112527708
  Check point factors
   HRAD17(Rad24)-RFC complex
    112527708
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 Mg_chelatase AAA_16 Rad17 Viral_helicase1 AAA_5 RCF1-5-like_lid AAA_24 nSTAND3 AAA_11 RuvB_N AAA_19 AAA_assoc_2 AAA_25 MeaB ResIII IstB_IS21 bpMoxR AAA_30 AAA_28 AAA_18 AAA_7 ABC_tran DNAX_ATPase_lid AAA_3 RNA_helicase NTPase_1 SRP54 UvrD-helicase DO-GTPase1 KTI12 MipZ NPHP3_N SLFN-g3_helicase cobW FtsK_SpoIIIE DUF815
Other DBs
NCBI-GeneID: 112527708
NCBI-ProteinID: XP_024994250
LinkDB
Position
LG 15:16363994..16368689
AA seq 333 aa
MASSSSSLSSHGYEIPWVEKFRPTKVADIVGNEDAVSRLQVIAHDGNMPNLILAGPPGTG
KTTSILALAHELLGQNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVIILD
EADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQEILGR
LMIVVDAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYTGFRFVNQENVFKVCDQPHPL
HVKNMVRNVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
FAHMRICDGVGSYLQLCGLLSKLSLACLTAKAA
NT seq 1002 nt   +upstreamnt  +downstreamnt
atggcttcttcatcatcttctctatctagccatggatacgagattccgtgggttgagaag
ttccgaccgacaaaggtggcagacattgtcggaaacgaagatgccgtctccaggctccaa
gtaatcgcacacgatggtaacatgccgaatctcatcttagctggtcctcctggaactggt
aagaccacaagcatattagctcttgcacatgagctactaggacaaaattacaaggaggct
gttttggagctgaatgcatcagatgatagaggcattgatgtcgtgagaaacaaaattaag
atgtttgcacagaaaaaagtcacattaccccccggcaggcacaaagtaattattttggat
gaagccgacagcatgacatctggagcacaacaagcattgaggaggacaatggaaatatat
tcaaactctacccgttttgctcttgcatgcaacacatctgcaaaaataattgaacccatc
cagagtagatgtgcccttgttcggttttccaggttgtctgaccaggagatccttggtcgt
ctcatgattgttgtcgatgcagagaaggtgccatatgtcccagaagggctcgaagctata
attttcactgctgatggcgatatgcgacaggcgttgaataatttacaagctacttatact
ggatttcggttcgtcaatcaagaaaatgttttcaaggtgtgcgaccagcctcatcccttg
catgtgaagaatatggttcgcaatgtcctcgagggaaaattcgatgatgcttgttctggt
ctaaagcaactttatgatctgggctattccccaactgatatcatcacaactcttttccga
atcataaagaactatgacatggcagagtatctgaaattggagttcatgaaggaaactgga
tttgcccatatgaggatctgtgatggagttggttcgtatcttcaactatgtggtttgctt
tctaaactctctctagcttgtctgactgctaaagcagcataa

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