KEGG   Cynara cardunculus var. scolymus (artichoke): 112527784
Entry
112527784         CDS       T05604                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccav03009]
    112527784
Ribosome biogenesis [BR:ccav03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    112527784
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_VPS8 EIF3I Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_EML Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_WDR41 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IP5PC_F Beta-prop_IFT122_1st WDR54 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_ACSF4 Beta-prop_Aladin Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_LRRK2 Beta-prop_Vps41 Beta-prop_WDR19_1st VPS8_N DUF465
Other DBs
NCBI-GeneID: 112527784
NCBI-ProteinID: XP_024994352
LinkDB
Position
LG_15
AA seq 451 aa
MEDEVVIASSSTEAGIGCWDLRSGAEHLRYRSCASPSHGLVSVAGRFLASSQLRDSSSSS
GSVLCWSWNKPQIEVKSFPAEAINPLACNSDGTYIVGGGVSGDIYLWEVATGRLLKKWHG
HYRAVTCLVFSDDQSLLISGAEDGSVRVWSLLMIFDEERQQRAGHLYEYSFSEHALPVTD
IVTGYGGCNAIIISASQDRTCKVWSLARGTLLRNIVFPSMIDAIALDPGEHVFYAGGRDG
KIYIAELNAQGTSNNNYGLHIIGTLSDQGKGICSLAFALDGSQLVAGSEDGMVRVWDTKT
HNIIRVFRHAKGPVNNVLVIRQPPALYPRTSANNQASVARRHVPLPPPLEKYTSIDEHSD
LNAFITPQPNCDKLYDATYTTFHSMNNQINELQQHGSSGASELEMERLKLDCKRSMQMVE
QWKKMYENLHQFCVGELLNGEADDANLTLTS
NT seq 1356 nt   +upstreamnt  +downstreamnt
atggaagacgaagtagtcatagcttcttcatcgaccgaagctggaattggttgctgggat
cttcgttccggcgcagaacacctccggtaccgctcatgcgcctctccttctcacggcctt
gtatccgtcgccggacgcttcctcgcgtcctctcagctccgtgattcgtcatcatcctct
ggctccgttctctgttggtcgtggaacaagcctcaaatagaagtcaagagttttccagct
gaagcaatcaatcctcttgcttgtaatagtgatggcacttacatagttggaggaggagtt
tctggggatatttacttgtgggaggtcgcaaccggtagattattgaagaagtggcatggt
cactatagggctgttacttgcttggtgttttctgatgatcagtcgcttttgatttctggg
gctgaggatggatcagttcgagtttggtcgcttctgatgatatttgatgaggagcgacaa
cagcgagcggggcatctttatgagtatagtttctctgaacatgctttgcctgtaactgat
attgtcactggctatggaggatgtaatgcaattataatatctgcttcgcaggatcgtaca
tgcaaggtgtggagtctagctagggggactttgttgagaaatatcgtgttcccttcaatg
atcgatgcaattgctttggatcctggggagcatgttttctatgctggtggtagagatggc
aagatatatattgcagaactcaatgctcaaggcacatctaacaacaattatggattgcat
atcatcggtacattgtctgatcaaggtaagggcatatgctctttggcttttgcgctggat
ggatctcaattggttgctggatcagaggatggcatggttcgagtctgggacactaagacc
cataatatcattcgtgttttcagacatgcaaaaggtcccgttaacaatgttcttgttatt
cgacagccaccagccctttaccctcgaacatctgcaaataatcaagcttcagtggcaaga
aggcacgtgccattgccacctccactcgagaaatacacatcaatagacgaacactcagat
cttaatgcattcatcactcctcagcccaattgcgataagctttatgatgcgacgtacacc
acttttcactcaatgaacaaccagattaatgaacttcagcaacatggttcttctggagct
tctgaattggagatggaaaggctgaaactagattgcaaaaggtccatgcaaatggtcgag
caatggaagaagatgtatgaaaatttgcaccaattttgtgttggcgagcttctgaatggt
gaagccgatgacgccaacttgacactcacttcatga

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