Cynara cardunculus var. scolymus (artichoke): 112528005
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Entry
112528005 CDS
T05604
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112528005
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112528005
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
112528005
Protein phosphatases and associated proteins [BR:
ccav01009
]
HAD phosphatases
Fcp/Scp phosphatases
112528005
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
112528005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_CPL3
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
112528005
NCBI-ProteinID:
XP_024994654
LinkDB
All DBs
Position
LG 15:complement(13286660..13292189)
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AA seq
1232 aa
AA seq
DB search
MGKDLLVSLDVDVEEGEISDSASIEEISADDFSKSSAIGTEIAASKNAAVDDSKQQQQHQ
KVWTMQDLLKYQNKYQISRNYAPGLYNFAWAQAVQNKPLDDYLTTMNTSTTTDNNLKQPL
LNDVGNNNIEVKEEEMVNNDYMSMDDASEKEEGELEEGEIDLDMEVVQSSKQGEGEEDNV
EKCISVIRLGLEGITVSDAKKSYGGVCSRLGDLLDSLSKMLIENSISIKDDLVQLAFSAI
QLVNSVFCSMSQNQKEQSRRLLSRVLTNVKSHMPAIFSPEQLKEVDIMLLSCNSNVVCSS
AKDYKEGYIPITHSVNQKDFVFSAMIANQEVASPSEDSVLDAMPVGTSDQNPKQSESLKM
QTSTSKNRVLLPLLDLHKDHDVDSLPSPTRDTTHALPLGKALFVGDAAIRPEWPAPRGLL
GTQNAVVHRYETDALKAVSTYQLKFGRSSFLSNDLPSPTPSEESGDAGGDCSGEVSSFSA
VQNANSVTEAVSERRDTFSIPHVERPNVQLFTNAKSAAPVYSTSSSVMRVPNKTRDPRLR
LANTESSLDYTQGTLPLSSKQSAMEPLDGLPGSRKQKTFDESVLIDGPAPKRLKSEFADS
SNPRDNATVSQTGGRLEDRVSLGMQVSNRTGNVTSEARGLENAVTTSALLNTSSGSMHIP
ATGVTPTSASLQSILKDIAVNPATWMNIINMEQQKSVDPAKYVTQSLSQNSFQASMPMTT
VASQPLVLGQRSTADMQTPHPAATDDSGKVRMKPRDPRRALHSKSLQKPGFVGPDQPVTN
LSTAEGTKGNPKQADPKVLSSQPLSAPDIAWQFTKNLKNIADIVSVSQTTASASVQTPSS
QPAQVHPSFVNMKGPPAQPGHLQNGIGKTSEEAPSTPSQPQNAWGDVEQYFGRFDDQQRA
AIQRERSKRMEEQKKMFADHKLCLVLDLDHTLLNSAKFSEIEPMHDEMLKKKEEQDREKP
HRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFNG
RVISRGDDGDSVDGDPKSKDLEGVLGMESAVVIIDDSIRVWPHNKLNLIVVERYIYFPCS
RRQFGLPGPSLLEIDHDERPEDGTLASSLAVIEKIHRNFFLQQSLDDADVRNILASEQRK
ILGGCRIVFSRVFPVGEASPHLHPLWQTAEQFGAVCTNQIDEQVTHVVANSLGTDKVNWA
LSTGRFVVHPGWVEASALLYRRANEHDFGVKP
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatttattggtatctctagatgtggatgtagaggaaggtgaaatatccgat
tcagcctctattgaagagatcagtgcagatgatttttctaagtcgtcggcaattgggacg
gagattgctgcttctaagaatgcagccgttgacgattccaagcagcaacagcagcatcag
aaagtttggacgatgcaggatctgttaaagtatcagaataagtatcagatttctagaaat
tacgcacctgggttgtataattttgcctgggcacaggctgttcagaataaacctcttgat
gattatctaacaaccatgaacactagtactaccactgataacaacttgaagcagcccttg
ttgaatgacgttggtaataataatattgaggtgaaggaggaagagatggtaaacaatgat
tatatgagcatggacgacgctagcgagaaggaggaaggggaactggaggagggtgaaatt
gatttggatatggaggttgtccagtctagtaaacaaggagaaggagaagaggataatgta
gagaagtgcattagtgtaattcgtcttgggttggagggtataactgtgagtgatgcaaag
aaatcatatggtggagtctgttccagacttggggacttgctggacagcttgtcaaaaatg
cttattgaaaattccatctccatcaaagatgatttggttcagctggcattttctgctatc
cagcttgttaattcagtgttttgctccatgagccaaaatcaaaaggagcagagtaggcgc
ttattatcaagggtgctgactaatgtgaaaagccacatgcctgctattttctcacctgaa
caattgaaagaggtagatataatgcttctgtcatgtaactctaatgttgtttgttcaagt
gccaaggactataaggaaggatatataccgattactcactcggtgaatcagaaggatttt
gttttctcagccatgatagctaatcaggaagtggcttctccaagtgaggactctgtcttg
gatgccatgccggttggaacctcagatcaaaatcccaaacaatctgagtcgttgaaaatg
caaacatctacttccaagaacagagtattgcttcctcttcttgaccttcataaggatcat
gatgtggacagtcttccatcaccaacacgtgatactacacatgctttacctctaggtaaa
gcactctttgttggggatgcagcaataagaccagagtggcctgctcctcggggacttctt
ggaacacaaaatgcggtagtacatcgttatgaaactgatgctctcaaagcggtttctact
tatcaactgaaatttggacgaagttcatttttgtcaaatgatctaccaagtccaacccct
tctgaagaaagtggtgatgcaggtggtgattgtagtggagaggtttccagcttctcagca
gttcagaatgcaaactctgtaacagaggctgtttcagaacgaagagatacttttagcatt
ccccatgtagaaagacctaatgtgcaattatttacaaatgctaagagtgctgcccctgtg
tattccacatctagttctgtgatgagagttccaaacaaaacaagagaccctagactccga
ttagccaatactgaaagctctttagattacacccaaggcactttacctttgtccagtaaa
caatctgcaatggaaccacttgatggattgcctggttcaaggaaacagaagacttttgat
gagtctgtgctgatagatggtcctgcaccaaaaaggctaaaaagcgaatttgcagattct
tccaaccctagggataatgcaactgtctcacaaactggtggtcggttggaggatagagtt
tcattagggatgcaggtatcaaatagaacaggaaatgtaacaagtgaggcccgaggctta
gaaaatgctgtaacaacctctgctttgctcaataccagtagtgggagcatgcatattcct
gctacaggggttactcccacctcggcatccttgcaatcaattctgaaggatattgcagtg
aatcctgcaacatggatgaatataattaatatggaacaacagaaatcagttgatcctgca
aagtacgtgacacaatctctaagccaaaattcttttcaggcatcgatgccaatgactaca
gttgcttctcaaccattggtgcttgggcagaggtcaacagctgatatgcaaacaccgcat
ccagctgcaacggatgactctggcaaagtacgaatgaaacctcgtgatcctcgccgtgct
ctgcacagtaaatcattacaaaagccaggttttgtgggtcctgatcaaccggttaccaat
ttatcaactgccgaagggactaaggggaaccccaagcaagcagatccaaaagttctatca
tcccaacctctctcagcaccggatattgcctggcaattcaccaagaatttgaaaaatatt
gcggatattgtgtctgtgtcccagacaactgcaagtgcctctgttcaaacgccttcatca
cagcctgcacaggtccatccaagttttgtgaatatgaaagggccacctgcacagccaggc
caccttcagaatgggattgggaagacatctgaagaagctccttcgaccccctcccaacca
cagaatgcttggggggatgttgagcaatattttggacggtttgatgaccagcagcgggct
gccattcagagggagaggtcaaaaagaatggaagaacagaaaaagatgtttgcagaccac
aagctatgtcttgtgttggatctagatcacacccttctgaattcagctaagttttctgaa
attgaaccaatgcatgatgagatgttgaaaaagaaagaagaacaggaccgtgagaagcca
cataggcatctctttagatttccgcacatgggtatgtggaccaaactgcggcctgggata
tggaacttcttagagaaggccagtaagctttatgagcttcatttatatacaatgggaaac
aaactatatgctacagagatggccaaagtgcttgatccaaaaggagttctattcaatgga
cgagttatctcgaggggtgatgatggtgatagtgttgatggagatcccaagagtaaggac
ttggaaggggttttgggtatggagtcagcagttgtaattatagacgattctataagagtc
tggcctcataacaagcttaacttaatagtcgtagaaagatatatatattttccatgtagt
aggcgccagtttgggcttccaggtccgtcgcttctagagattgatcatgatgagaggccg
gaggacggaacattggcatcttctttggcggttatcgagaaaatacatcgaaactttttc
ttgcaacaatctttagatgatgccgatgttagaaatatactagcatccgagcagagaaag
attttaggtgggtgtcgtattgtattcagcagggtgttccctgtgggtgaagccagtcct
cacttgcatccgttatggcaaactgccgaacaatttggtgcggtatgcaccaatcaaata
gatgaacaggtcacccatgtggttgccaattctcttgggactgataaggttaattgggcc
ctttctacaggaagatttgtggtgcatcctggctgggtggaagcttcagccttactttac
cggagagccaatgagcatgattttggtgtcaaaccttga
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